RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 BCORP1Q8N888 145 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 FAM98AQ8NCA5 519 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 ACTRT2Q8TDY3 377 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 GRHL3Q8TE85 626 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 MIB2Q96AX9 1013 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 COQ8BQ96D53 544 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 SPACA9Q96E40 222 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 ELP4Q96EB1 424 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 MS4A3Q96HJ5 214 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 LCORQ96JN0 433 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 MAELQ96JY0 434 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 SGCZQ96LD1 299 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 NXF5Q9H1B4 397 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 AGPAT4Q9NRZ5 378 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 TAS2R9Q9NYW1 312 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 C19orf53Q9UNZ5 99 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 NTNG1Q9Y2I2 539 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 KLF13Q9Y2Y9 288 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 CAPN14A8MX76 684 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 J3QKU1 62 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF195O14628 629 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 TGDSO95455 350 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 FBXO45P0C2W1 286 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 EFNA1P20827 205 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 PPICP45877 212 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 TMED10P49755 219 aaKnown RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 CLNS1AP54105 237 aaKnown RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 FOXK1P85037 733 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF155Q12901 538 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 MLC1Q15049 377 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 IGFBP7Q16270 282 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 NNATQ16517 81 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 PGS1Q32NB8 556 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF791Q3KP31 576 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 EPGNQ6UW88 154 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 LYPD8Q6UX82 237 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 ACAD11Q709F0 780 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 ATCAYQ86WG3 371 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 OR2L13Q8N349 312 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 GOLM1Q8NBJ4 401 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 PSD4Q8NDX1 1056 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 FAM13CQ8NE31 585 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 CEP70Q8NHQ1 597 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 HSPBAP1Q96EW2 488 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 MAGED4Q96JG8 741 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 VSTM2LQ96N03 204 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 BTBD9Q96Q07 612 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 TAAR6Q96RI8 345 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 DUSP26Q9BV47 211 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 BHLHE41Q9C0J9 482 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 FOLH1BQ9HBA9 442 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 AIG1Q9NVV5 245 aa12.54□□□□□ -0.4
SHMT2-228ENST00000557302 SPENQ96T58 3664 aaKnown RBP12.54□□□□□ -0.4
SHMT2-228ENST00000557302 A0A1W2PRB8 838 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 FRG2CA6NGY1 282 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 KLRC4-KLRK1H3BQV0 150 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 UPK1AO00322 258 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 ANKRD28O15084 1053 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 ACOX3O15254 700 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 ERN1O75460 977 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 CRYABP02511 175 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 DRD5P21918 477 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 CDK9P50750 372 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 PSPHP78330 225 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 PMP22Q01453 160 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 SRSF11Q05519 484 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 RPS6KA2Q15349 733 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 LSM12Q3MHD2 195 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 TMEM64Q6YI46 380 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 CAMKMTQ7Z624 323 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 DNAJB8Q8NHS0 232 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 NUDT8Q8WV74 236 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 FAR1Q8WVX9 515 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 OR5P2Q8WZ92 322 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 OR52B2Q96RD2 323 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 BARD1Q99728 777 aaKnown RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 SACM1LQ9NTJ5 587 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 OLAHQ9NV23 265 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 GPR55Q9Y2T6 319 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-228ENST00000557302 NPFFR2Q9Y5X5 522 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 MYO18BQ8IUG5 2567 aa12.53□□□□□ -0.4
SHMT2-228ENST00000557302 ASPDHA6ND91 283 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 TCP11X1B4DZS4 312 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PYCARD-AS1I3L0S3 204 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 TP53I11O14683 189 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 TO15178 435 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 UBDO15205 165 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 POLR3GO15318 223 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PEX1O43933 1283 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 NME6O75414 186 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-228ENST00000557302 PSMG1O95456 288 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 C6orf47O95873 294 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 P04436 131 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 CCL3P10147 92 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 IDO1P14902 403 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 NAGAP17050 411 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 ABCD3P28288 659 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 KIR3DL1P43629 444 aa12.52□□□□□ -0.41
SHMT2-228ENST00000557302 MEOX1P50221 254 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms