RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PRODH2Q9UF12 536 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 SH3BGRL2Q9UJC5 107 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 CNOT11Q9UKZ1 510 aaKnown RBP12.63□□□□□ -0.39
SHMT2-219ENST00000555563 CFL2Q9Y281 166 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 NPFFR2Q9Y5X5 522 aa12.63□□□□□ -0.39
SHMT2-219ENST00000555563 CROCCQ5TZA2 2017 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PTPN13Q12923 2485 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 EML6Q6ZMW3 1958 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 TRGV8A0A0C4DH27 118 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ACOT7O00154 380 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 AKAP10O43572 662 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PEX11AO75192 247 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 GLSO94925 669 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 BCKDHAP12694 445 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ABCD3P28288 659 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 CA7P43166 264 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 TMED10P49755 219 aaKnown RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 MAGOHP61326 146 aaKnown RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PPIAP62937 165 aaKnown RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PLCXD2Q0VAA5 305 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PDE7AQ13946 482 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ATP6AP1LQ52LC2 224 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF385BQ569K4 471 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 TMEM107Q6UX40 140 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 BNC2Q6ZN30 1099 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 FGD2Q7Z6J4 655 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 OR52N2Q8NGI0 321 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 MGARPQ8TDB4 240 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PPCDCQ96CD2 204 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF764Q96H86 408 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 LCORQ96JN0 433 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 AMDHD1Q96NU7 426 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 BTBD9Q96Q07 612 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 PAIP2Q9BPZ3 127 aaKnown RBP12.62□□□□□ -0.39
SHMT2-219ENST00000555563 C1orf50Q9BV19 199 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 REEP4Q9H6H4 257 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 IL1RL2Q9HB29 575 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 CNIH4Q9P003 139 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 BAIAP2L1Q9UHR4 511 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 TINAGQ9UJW2 476 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 ZNF835Q9Y2P0 537 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 RAP2CQ9Y3L5 183 aa12.62□□□□□ -0.39
SHMT2-219ENST00000555563 A0A1B0GUH1 482 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 WIPF3A6NGB9 483 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 FRG2CA6NGY1 282 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 LRRC3CA6NJW4 275 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 CAPN14A8MX76 684 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 ACOX3O15254 700 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 PDPK1O15530 556 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 CDC40O60508 579 aaKnown RBP eCLIP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 PLOD3O60568 738 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 BCAS2O75934 225 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 GRK2P25098 689 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 MAPK1P28482 360 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 ASMTP46597 345 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 SLC1A6P48664 564 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 WDR4P57081 412 aaKnown RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 CORO7P57737 925 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 KCNJ2P63252 427 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 HSPB3Q12988 150 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 PDCD2Q16342 344 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 C3AR1Q16581 482 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 HHATQ5VTY9 493 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 BICRALQ6AI39 1079 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 SLC22A16Q86VW1 577 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 LIX1Q8N485 282 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 TMEM251Q8N6I4 163 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 FNDC5Q8NAU1 212 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 SPPL2AQ8TCT8 520 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 RELTQ969Z4 430 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 CIDECQ96AQ7 238 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 TUBGCP3Q96CW5 907 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 OMA1Q96E52 524 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 HSPBAP1Q96EW2 488 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 PPP1R36Q96LQ0 422 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 VSTM2LQ96N03 204 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 ZDHHC11Q9H8X9 412 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 PROK2Q9HC23 129 aa12.61□□□□□ -0.39
SHMT2-219ENST00000555563 GPR55Q9Y2T6 319 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.61□□□□□ -0.39
SHMT2-219ENST00000555563 USP9XQ93008 2570 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 FLNCQ14315 2725 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 A0A087WV62 115 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 A0A1B0GTH9 108 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 TP53I11O14683 189 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 TO15178 435 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 TBX19O60806 448 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 COQ9O75208 318 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ERN1O75460 977 aaKnown RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PPM1BO75688 479 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PDE9AO76083 593 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 SLITRK5O94991 958 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ABCB1P08183 1280 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-219ENST00000555563 ABOP16442 354 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 DRD5P21918 477 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 HPCAL1P37235 193 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 MAGEA5P43359 124 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PPICP45877 212 aa12.6□□□□□ -0.39
SHMT2-219ENST00000555563 PER3P56645 1201 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms