RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CD207Q9UJ71 328 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 TMA7Q9Y2S6 64 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 FAM227AF5H4B4 570 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 NPPBP16860 134 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 PRDX1Q06830 199 aaKnown RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 SHHQ15465 462 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 SPRED1Q7Z699 444 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ADIPOR2Q86V24 386 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ZNF527Q8NB42 609 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 SLCO4A1Q96BD0 722 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 HHIPQ96QV1 700 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 WACQ9BTA9 647 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CKLFQ9UBR5 152 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 MAU2Q9Y6X3 613 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 SLCO2B1O94956 709 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CXCL10P02778 98 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CDK4P11802 303 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 PIGAP37287 484 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CRYZQ08257 329 aaKnown RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 PUM1Q14671 1186 aaKnown RBP eCLIP15.41■□□□□ 0.063e-7■■□□□ 11.4
CUX1-213ENST00000549414 BICRALQ6AI39 1079 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 FAM180AQ6UWF9 173 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ZNF367Q7RTV3 350 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 GKN2Q86XP6 184 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CHST4Q8NCG5 386 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ADAD1Q96M93 576 aaKnown RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 ERVK13-1Q9NX77 482 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ING4Q9UNL4 249 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 PLEKHM1Q9Y4G2 1056 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 PAPPA2Q9BXP8 1791 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 A0A1B0GW55 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 FAM172BPA6NC97 362 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L2P0CJ85 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L3P0CJ86 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L4P0CJ87 422 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L5P0CJ88 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L6P0CJ89 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4L7P0CJ90 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 OSMP13725 252 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ZNF823P16415 610 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 HENMT1Q5T8I9 393 aaKnown RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 MEDAGQ5VYS4 303 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 SNX29P2Q8IUI4 249 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 METTL25Q8N6Q8 603 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 OR2L5Q8NG80 312 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 FNDC8Q8TC99 324 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 RPL3LQ92901 407 aaKnown RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 TRIM63Q969Q1 353 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 GPER1Q99527 375 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ACTL8Q9H568 366 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 DUX4Q9UBX2 424 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 KRBA1A5PL33 1030 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 KLK3P07288 261 aaPredicted RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 ASTLQ6HA08 431 aaPredicted RBP15.41■□□□□ 0.06
CUX1-213ENST00000549414 NUP54Q7Z3B4 507 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 KLBQ86Z14 1044 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 METTL4Q8N3J2 472 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 LNX2Q8N448 690 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 UBE2FQ969M7 185 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 CCDC115Q96NT0 180 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ZFYVE21Q9BQ24 234 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 OR51E2Q9H255 320 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 ZNF576Q9H609 170 aa15.41■□□□□ 0.06
CUX1-213ENST00000549414 SH3PXD2BA1X283 911 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 SIPA1L1O43166 1804 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 FZD6O60353 706 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 GKN3PP0CG01 181 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 ACPPP15309 386 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 HIST1H1TP22492 207 aaPredicted RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 PYCR1P32322 319 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 TTLL10Q6ZVT0 673 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 PTRH1Q86Y79 214 aaKnown RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 MCEMP1Q8IX19 187 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 CYB561A3Q8NBI2 242 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 PAPD5Q8NDF8 572 aaKnown RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 OR8J2Q8NGG1 315 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 OR8K3Q8NH51 312 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 OR56A3Q8NH54 315 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 THEM6Q8WUY1 208 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 CNDP2Q96KP4 475 aaKnown RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 HSPE1-MOB4S4R3N1 261 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 KLHL33A6NCF5 533 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 C9J4A7 227 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 C11orf98E9PRG8 122 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 HCRTR2O43614 444 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 RENP00797 406 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 RNH1P13489 461 aaKnown RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 DCKP27707 260 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 ACVR1BP36896 505 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 FCRLBQ6BAA4 426 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 ZNF683Q8IZ20 524 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 NEIL3Q8TAT5 605 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 MED28Q9H204 178 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 SAGE1Q9NXZ1 904 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 KCMF1Q9P0J7 381 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 ZFR2Q9UPR6 939 aaKnown RBP15.4■□□□□ 0.06
CUX1-213ENST00000549414 PCDHGB5Q9Y5G0 923 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 PRAMEF33A0A0G2JMD5 474 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 CD8B2A6NJW9 211 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 PRAMEF10O60809 474 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms