RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 LDB3O75112 727 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 STX11O75558 287 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 JRKO75564 520 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 GADD45GO95257 159 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 H6PDO95479 791 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 OXSR1O95747 527 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 UBTFL6P0CB48 400 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 CKMT1AP12532 417 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 IGFBP5P24593 272 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PRKAR1BP31321 381 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 XCR1P46094 333 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 STT3AP46977 705 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 SEPHS1P49903 392 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 NUBP1P53384 320 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 ADARB1P78563 741 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 DAB2P98082 770 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 SRSF5Q13243 272 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TOP3AQ13472 1001 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TRA2AQ13595 282 aaKnown RBP eCLIP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PRICKLE4Q2TBC4 344 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TRIM61Q5EBN2 209 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 COLEC12Q5KU26 742 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 AP1ARQ63HQ0 302 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TTC33Q6PID6 262 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PRSS41Q7RTY9 318 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 DGLUCYQ7Z3D6 616 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 OR4N5Q8IXE1 308 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 C8orf59Q8N0T1 100 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TAGAPQ8N103 731 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TMEM105Q8N8V8 129 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 ATG16L2Q8NAA4 619 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 CHDHQ8NE62 594 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TOR1AIP2Q8NFQ8 470 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 OR7G1Q8NGA0 311 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 OR5T3Q8NGG3 340 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PHF10Q8WUB8 498 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 OIT3Q8WWZ8 545 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 CTHRC1Q96CG8 243 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PEX11GQ96HA9 241 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 SLC7A5P2Q9GIP4 190 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 POLR2J2Q9GZM3 115 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 POLR2J3Q9H1A7 115 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 LRRN3Q9H3W5 708 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 ZNF696Q9H7X3 374 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 ZNF304Q9HCX3 659 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 EQTNQ9NQ60 294 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 FGF21Q9NSA1 209 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 PRODH2Q9UF12 536 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 NDOR1Q9UHB4 597 aa12.58□□□□□ -0.4
PTCH1-215ENST00000547672 TNRC6BQ9UPQ9 1833 aaKnown RBP12.58□□□□□ -0.4
PTCH1-215ENST00000547672 KNL1Q8NG31 2342 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 FAM227AF5H4B4 570 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 KHNYNO15037 678 aaKnown RBP12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SLC16A6O15403 523 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 PRAMEF2O60811 474 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SNAP29O95721 258 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 LGI1O95970 557 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 OPN1SWP03999 348 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 THBS1P07996 1170 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SP9P0CG40 484 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 ITGAMP11215 1152 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 CD247P20963 164 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 ALAS2P22557 587 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 CRYBA2P53672 197 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SPIBQ01892 262 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 DUSP2Q05923 314 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 DSG2Q14126 1118 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 LTB4RQ15722 352 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 DUSP7Q16829 419 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 MICAQ29983 383 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 IQCCQ4KMZ1 466 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 ZNF311Q5JNZ3 666 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SNAP47Q5SQN1 464 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 FHL5Q5TD97 284 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 DHRS4L2Q6PKH6 230 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 TBPL2Q6SJ96 375 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 GALNT10Q86SR1 603 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 GATAD2AQ86YP4 633 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 EID2Q8N6I1 236 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SMYD1Q8NB12 490 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 OR5D16Q8NGK9 328 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 OR10Q1Q8NGQ4 319 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SLC9A6Q92581 669 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 GIMAP5Q96F15 307 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 RMND5BQ96G75 393 aaPredicted RBP12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SLC35A4Q96G79 324 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 C16orf58Q96GQ5 468 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 ART5Q96L15 291 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 APOL4Q9BPW4 351 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 PSD2Q9BQI7 771 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 YIPF4Q9BSR8 244 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 YIPF2Q9BWQ6 316 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 TMEM121BQ9BXQ6 578 aaPredicted RBP12.57□□□□□ -0.4
PTCH1-215ENST00000547672 MRPS26Q9BYN8 205 aaKnown RBP12.57□□□□□ -0.4
PTCH1-215ENST00000547672 ING2Q9H160 280 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 SERHL2Q9H4I8 314 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 CXorf21Q9HAI6 301 aa12.57□□□□□ -0.4
PTCH1-215ENST00000547672 MKKSQ9NPJ1 570 aaPredicted RBP12.57□□□□□ -0.4
PTCH1-215ENST00000547672 KRT84Q9NSB2 600 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms