RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NDUFAF4Q9P032 175 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 SCN1AP35498 2009 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 SLC38A8A6NNN8 435 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 H3BQ06 376 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-215ENST00000544547 SCAMP2O15127 329 aaKnown RBP13.52□□□□□ -0.25
LIMS1-215ENST00000544547 GNRH1P01148 92 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 LAMP2P13473 410 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 GSTM3P21266 225 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 LASP1Q14847 261 aaKnown RBP13.52□□□□□ -0.25
LIMS1-215ENST00000544547 OPCMLQ14982 345 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 GPR33Q49SQ1 333 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 YIF1BQ5BJH7 314 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 SLC30A6Q6NXT4 461 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 SERPINA12Q8IW75 414 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 PGBD5Q8N414 524 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF248Q8NDW4 579 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 OR4F15Q8NGB8 312 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 OR4C6Q8NH72 309 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 ADAMTS19Q8TE59 1207 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 TM9SF4Q92544 642 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF705EA8MWA4 302 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-215ENST00000544547 FLRT2O43155 660 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 MTRF1O75570 445 aaKnown RBP13.52□□□□□ -0.25
LIMS1-215ENST00000544547 GJB5O95377 273 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 OR12D1P0DN82 309 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 CCR6P51684 374 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 ODF4Q2M2E3 257 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM220Q6QAJ8 160 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 FAM220AQ7Z4H9 259 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 GIMAP1Q8WWP7 306 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 NT5DC2Q9H857 520 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 ACOXLQ9NUZ1 547 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 EMC3Q9P0I2 261 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 FBXW2Q9UKT8 454 aa13.52□□□□□ -0.25
LIMS1-215ENST00000544547 TRBV4-1A0A0J9YWV2 114 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 A0A1B0GVI7 797 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 MBLAC1A4D2B0 266 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ARPC1BO15143 372 aaKnown RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CREBL2O60519 120 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PRMT3O60678 531 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 RPP14O95059 124 aaKnown RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 EOMESO95936 686 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 C8AP07357 584 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CSKP41240 450 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 P2RY14Q15391 338 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 RAB41Q5JT25 222 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 LYPD4Q6UWN0 246 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 GPR135Q8IZ08 494 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 LINC01465Q8N7H1 131 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ANKK1Q8NFD2 765 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM19Q96HH6 336 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CAPNS2Q96L46 248 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 UQCC2Q9BRT2 126 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CNIH4Q9P003 139 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF225Q9UK10 706 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 LGALS8O00214 317 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CACNG3O60359 315 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 SIX6O95475 246 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 APODP05090 189 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 HLA-DMAP28067 261 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 RNF144AP50876 292 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 AP1S2P56377 157 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 EXOSC2Q13868 293 aaKnown RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF551Q7Z340 670 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TSPAN33Q86UF1 283 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PXYLP1Q8TE99 480 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ZBED6CLQ96FA7 236 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM121BQ9BXQ6 578 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TCF7L1Q9HCS4 588 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CXXC1Q9P0U4 656 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 B3GALNT1O75752 331 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 IL3P08700 152 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CEBPGP53567 150 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 RBBP4Q09028 425 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 SCLYQ96I15 445 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 EXO5Q9H790 373 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CERS4Q9HA82 394 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ELL3Q9HB65 397 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 P2RX2Q9UBL9 471 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM5Q9Y2B1 443 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 CSNK1G3Q9Y6M4 447 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 A0A0G2JMP0 313 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 A0A0X1KG70 313 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 HYKKA2RU49 373 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ANHXE9PGG2 379 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 SYPP08247 313 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 JUPP14923 745 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PCSK2P16519 638 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TIA1P31483 386 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMS1-215ENST00000544547 GATMP50440 423 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PRKCZQ05513 592 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM17Q86X19 198 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 OR4M2Q8NGB6 313 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 HUS1BQ8NHY5 278 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 NKD1Q969G9 470 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PKMYT1Q99640 499 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 ACSL5Q9ULC5 683 aa13.51□□□□□ -0.25
LIMS1-215ENST00000544547 PTPRZ1P23471 2315 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 K7ERQ8 282 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms