RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 OR10H5Q8NGA6 315 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ASB11Q8WXH4 323 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 FIG4Q92562 907 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TP53INP1Q96A56 240 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 MSI2Q96DH6 328 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SNF8Q96H20 258 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SENP5Q96HI0 755 aaPredicted RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TSNARE1Q96NA8 513 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 DGAT2Q96PD7 388 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CSF3RQ99062 836 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 G6PC3Q9BUM1 346 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ACTR6Q9GZN1 396 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 COPS7BQ9H9Q2 264 aaPredicted RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CLK4Q9HAZ1 481 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 SERHLQ9NQF3 203 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CISD1Q9NZ45 108 aaKnown RBP4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PRR13Q9NZ81 148 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CLCF1Q9UBD9 225 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 HEY2Q9UBP5 337 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ADAMTS6Q9UKP5 1117 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 TCAF1Q9Y4C2 921 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 PCDHGB1Q9Y5G3 927 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 CLDN16Q9Y5I7 305 aa4.29□□□□□ -1.72
LIMS1-214ENST00000542845 ROS1P08922 2347 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PABPN1LA6NDY0 278 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CAPN14A8MX76 684 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 H3BMM5 538 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 AKAP10O43572 662 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PSTPIP1O43586 416 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 DYRK3O43781 588 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 AKR1B10O60218 316 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 RAMP1O60894 148 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 LY6HO94772 140 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SNUPNO95149 360 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 FTCDO95954 541 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SERPINC1P01008 464 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CGAP01215 116 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CD8AP01732 235 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ESR1P03372 595 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CRHP06850 196 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 HIST1H2AGP0C0S8 130 aaPredicted RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 MPC1LP0DKB6 136 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SMIM10L1P0DMW3 83 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 APEHP13798 732 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PPP3CBP16298 524 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 KRT15P19012 456 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 HIST1H2ADP20671 130 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CERS1P27544 350 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PTPN6P29350 595 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ATP5DP30049 168 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SKIV2L2P42285 1042 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CLCN7P51798 805 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 LIM2P55344 173 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 C21orf58P58505 322 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 DSCR9P59020 149 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 STXBP1P61764 594 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 HERVK_113P63132 956 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ERVK-8P63133 956 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 IRX1P78414 480 aaPredicted RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ZBED6P86452 979 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ACVR1Q04771 509 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 LAPTM5Q13571 262 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 GBX1Q14549 363 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF267Q14586 743 aaPredicted RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 IQCB1Q15051 598 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 TSC22D1Q15714 1073 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 NTRK2Q16620 822 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF672Q499Z4 452 aaPredicted RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 IQCCQ4KMZ1 466 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PCID2Q5JVF3 399 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PRR31Q5SQ13 230 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SLC35F1Q5T1Q4 408 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 HLA-DQA1Q5Y7H0 255 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 TIGD3Q6B0B8 471 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 MRNIPQ6NTE8 343 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ADAM5Q6NVV9 412 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 AADACL2Q6P093 401 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CYHR1Q6ZMK1 362 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 STAC2Q6ZMT1 411 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 DGAT2L6Q6ZPD8 337 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ADGRE4PQ86SQ3 457 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 ATG4DQ86TL0 474 aaPredicted RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 IFNEQ86WN2 208 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 RHOT2Q8IXI1 618 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 KLHDC8AQ8IYD2 350 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CPNE9Q8IYJ1 553 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 KATNAL2Q8IYT4 538 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 TAGAPQ8N103 731 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 KBTBD8Q8NFY9 601 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 OR4K1Q8NGD4 311 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 OR8K1Q8NGG5 319 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SPPL2AQ8TCT8 520 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 EEF1AKMT1Q8WVE0 214 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 LPGAT1Q92604 370 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 CAVIN3Q969G5 261 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 RHBDF1Q96CC6 855 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 RBM18Q96H35 190 aaKnown RBP4.28□□□□□ -1.72
LIMS1-214ENST00000542845 SMIM10Q96HG1 83 aa4.28□□□□□ -1.72
LIMS1-214ENST00000542845 HIST1H2AHQ96KK5 128 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms