RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ANKRD26P1Q6NSI1 321 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 LARP4Q71RC2 724 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS28-216ENST00000533806 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 LIX1Q8N485 282 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 OR2M7Q8NG81 312 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 OR10G3Q8NGC4 313 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 CLHC1Q8NHS4 586 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 NUDT8Q8WV74 236 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 TUBGCP3Q96CW5 907 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 ELP4Q96EB1 424 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 MEAF6Q9HAF1 191 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 PFDN4Q9NQP4 134 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 ACSS1Q9NUB1 689 aaPredicted RBP11.95□□□□□ -0.5
VPS28-216ENST00000533806 NKIRAS1Q9NYS0 192 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 NTMQ9P121 344 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 PRODH2Q9UF12 536 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 BCAP29Q9UHQ4 241 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 CNOT11Q9UKZ1 510 aaKnown RBP11.95□□□□□ -0.5
VPS28-216ENST00000533806 ANKRD33BA6NCL7 494 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 WIPF3A6NGB9 483 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SCAMP2O15127 329 aaKnown RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 ACOX3O15254 700 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SEMA7AO75326 666 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 NME6O75414 186 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 ABCB1P08183 1280 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 STSP08842 583 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 CT45A8P0DMV1 189 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 CT45A9P0DMV2 189 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 ABCD3P28288 659 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 MC3RP41968 323 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 GPR85P60893 370 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 DCAF7P61962 342 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 ALDH6A1Q02252 535 aaKnown RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 MLC1Q15049 377 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 KRTCAP3Q53RY4 240 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 CT45A2Q5DJT8 189 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 HLA-DQA1Q5Y7H0 255 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 BNC2Q6ZN30 1099 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 ZNF551Q7Z340 670 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 FBXW8Q8N3Y1 598 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 FNDC5Q8NAU1 212 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 FAM98AQ8NCA5 519 aaKnown RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 ZNF75CPQ92670 426 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 HOXB13Q92826 284 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 CIDECQ96AQ7 238 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 PPCDCQ96CD2 204 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 COQ8BQ96D53 544 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 HSPBAP1Q96EW2 488 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 LCORQ96JN0 433 aaPredicted RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 GPR137Q96N19 417 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SECISBP2Q96T21 854 aaKnown RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 FAM173AQ9BQD7 235 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 C1orf50Q9BV19 199 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 MANSC1Q9H8J5 431 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 PLSCR2Q9NRY7 297 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SACM1LQ9NTJ5 587 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 ZNF446Q9NWS9 450 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 CNIH4Q9P003 139 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SEC14L3Q9UDX4 400 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 ZNF835Q9Y2P0 537 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 SETXQ7Z333 2677 aaKnown RBP11.94□□□□□ -0.5
VPS28-216ENST00000533806 HECTD1Q9ULT8 2610 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 DOPEY1Q5JWR5 2465 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 HIVEP3Q5T1R4 2406 aa11.94□□□□□ -0.5
VPS28-216ENST00000533806 FRG2CA6NGY1 282 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ZNF195O14628 629 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ANKRD28O15084 1053 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 PDPK1O15530 556 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ASNA1O43681 348 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 UNC5CO95185 931 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 LAMP1P11279 417 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 G6PDP11413 515 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ZNF24P17028 368 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 NTSP30990 170 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 PIGAP37287 484 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 RFC3P40938 356 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 MAP3K8P41279 467 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 DIO3P55073 304 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 CLDN8P56748 225 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 CORO7P57737 925 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 FBXW4P57775 412 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 KCNK10P57789 538 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 PSG6Q00889 435 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 MAD2L1Q13257 205 aaPredicted RBP11.93□□□□□ -0.5
VPS28-216ENST00000533806 UBAP2LQ14157 1087 aaKnown RBP11.93□□□□□ -0.5
VPS28-216ENST00000533806 RPS6KA2Q15349 733 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 CMPK2Q5EBM0 449 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ATG16L1Q676U5 607 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 OGFOD2Q6N063 350 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 TMEM81Q6P7N7 255 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 TMEM107Q6UX40 140 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 NPSR1Q6W5P4 371 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 R3HCC1LQ7Z5L2 792 aaKnown RBP11.93□□□□□ -0.5
VPS28-216ENST00000533806 CAMKMTQ7Z624 323 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 FGD2Q7Z6J4 655 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 TRIM42Q8IWZ5 723 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 FAM26EQ8N5C1 309 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 KRTCAP2Q8N6L1 136 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 OR7A2PQ8NGA2 310 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 PRR7Q8TB68 274 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms