RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 COQ8BQ96D53 544 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 LCORQ96JN0 433 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 ITPAQ9BY32 194 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 ACSS1Q9NUB1 689 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 NOP53Q9NZM5 478 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 C19orf53Q9UNZ5 99 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 GPR55Q9Y2T6 319 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 BAHCC1Q9P281 2608 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 ANKUB1A6NFN9 424 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 SLCO1B7G3V0H7 640 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 UPK1AO00322 258 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 SDHDO14521 159 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 PDPK1O15530 556 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 IFI6P09912 130 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 KITP10721 976 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 LAMP1P11279 417 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 LBPP18428 481 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 PRPS1L1P21108 318 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 MC3RP41968 323 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 MEOX1P50221 254 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 CLDN8P56748 225 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 C21orf58P58505 322 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 GPR85P60893 370 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 NTRK2Q16620 822 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 SLC22A10Q63ZE4 541 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 TMEM107Q6UX40 140 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 OR2L13Q8N349 312 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 ZFP62Q8NB50 900 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-209ENST00000532725 PAQR8Q8TEZ7 354 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 HSPBAP1Q96EW2 488 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 VSTM2LQ96N03 204 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 TAS2R9Q9NYW1 312 aa18.3■□□□□ 0.52
CPSF1-209ENST00000532725 MARCOQ9UEW3 520 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-209ENST00000532725 PINLYPA6NC86 204 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 ZNF195O14628 629 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 TO15178 435 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 PSMG1O95456 288 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CT45A8P0DMV1 189 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CT45A9P0DMV2 189 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CCL3P10147 92 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 NAGAP17050 411 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 ABCD3P28288 659 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 HPCAL1P37235 193 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 RPL3P39023 403 aaKnown RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 MANFP55145 182 aaKnown RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 NRG3P56975 720 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 EIF2S3LQ2VIR3 472 aaKnown RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CT45A2Q5DJT8 189 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CPTPQ5TA50 214 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 OGFOD2Q6N063 350 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 SIAH3Q8IW03 269 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 POGLUT1Q8NBL1 392 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 OR10G3Q8NGC4 313 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 PIWIL2Q8TC59 973 aaKnown RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 ZBED6CLQ96FA7 236 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 BTBD9Q96Q07 612 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CLMPQ9H6B4 373 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 FOLH1BQ9HBA9 442 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 PROK2Q9HC23 129 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 SACM1LQ9NTJ5 587 aa18.29■□□□□ 0.52
CPSF1-209ENST00000532725 CHCHD2Q9Y6H1 151 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-209ENST00000532725 ZGRF1Q86YA3 2104 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 A0A0G2JMM0 328 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 A0A1W2PPB8 328 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 A0A1W2PRS3 328 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 TRPC5OSA6NMA1 111 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 KIR3DP1A8MWS1 328 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 CAPN14A8MX76 684 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 ACOX3O15254 700 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 P04436 131 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 ABCB1P08183 1280 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 DDX5P17844 614 aaKnown RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 FBXW4P57775 412 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 ALDH6A1Q02252 535 aaKnown RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 HSPB3Q12988 150 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 MLC1Q15049 377 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 OR2M7Q8NG81 312 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 LRRC8CQ8TDW0 803 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 C7orf26Q96N11 449 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 PRPF18Q99633 342 aaKnown RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 WDR55Q9H6Y2 383 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 INTS9Q9NV88 658 aaKnown RBP18.28■□□□□ 0.52
CPSF1-209ENST00000532725 NTMQ9P121 344 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 EML6Q6ZMW3 1958 aa18.28■□□□□ 0.52
CPSF1-209ENST00000532725 UQCRHLA0A096LP55 91 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 FRG2CA6NGY1 282 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 G3V3Y1 287 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 ANKRD28O15084 1053 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 EFNA1P20827 205 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-209ENST00000532725 EPHA3P29320 983 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 PIGAP37287 484 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 CORO7P57737 925 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 NNATQ16517 81 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 KRTCAP3Q53RY4 240 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 MAVSQ7Z434 540 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 CAMKMTQ7Z624 323 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 PRR22Q8IZ63 422 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 NATD1Q8N6N6 113 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 FAM13CQ8NE31 585 aa18.27■□□□□ 0.52
CPSF1-209ENST00000532725 OR5M3Q8NGP4 307 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms