RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SCUBE1Q8IWY4 988 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ST13P4Q8IZP2 240 aaPredicted RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 ZNF248Q8NDW4 579 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ZFP28Q8NHY6 868 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CDC26Q8NHZ8 85 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 STT3BQ8TCJ2 826 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 MR1Q95460 341 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 VPS33AQ96AX1 596 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 EXOSC8Q96B26 276 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 MIEF2Q96C03 454 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CNRIP1Q96F85 164 aaPredicted RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 PTCHD1Q96NR3 888 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CCDC115Q96NT0 180 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 AMDHD1Q96NU7 426 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 SH3GL1Q99961 368 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 PELOQ9BRX2 385 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 GPR87Q9BY21 358 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ALOXE3Q9BYJ1 711 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 AKIRIN1Q9H9L7 192 aaPredicted RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 SERHLQ9NQF3 203 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 THSD1Q9NS62 852 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 SEMA3GQ9NS98 782 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 C14orf105Q9NVL8 296 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 NDE1Q9NXR1 346 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 TAS2R1Q9NYW7 299 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 NTMQ9P121 344 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 HCN3Q9P1Z3 774 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ERVK-11Q9UQG0 969 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 FARSAQ9Y285 508 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 IGSF10Q6WRI0 2623 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 A0A087WV62 115 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 A0A096LPI6 279 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 IGKV3D-11A0A0A0MRZ8 115 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 C21orf140B9A014 251 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 C9J4A7 227 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 STMND1H3BQB6 276 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 NR5A2O00482 541 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 RFXANKO14593 260 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 B4GALT2O60909 372 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 LDB3O75112 727 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 KLF7O75840 302 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 BCAS2O75934 225 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 IGHEP01854 428 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ABCB1P08183 1280 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 CPMP14384 443 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 TCN2P20062 427 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 CAPN3P20807 821 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 UQCRC2P22695 453 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 PTPN4P29074 926 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 FEN1P39748 380 aaKnown RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 MAGEA8P43361 318 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 EMP2P54851 167 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 RPS15P62841 145 aaKnown RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 HBA1P69905 142 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 BTG2P78543 158 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 RHAGQ02094 409 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 FOLH1Q04609 750 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 SSPNQ14714 243 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 NSDHLQ15738 373 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 SPATS1Q496A3 300 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ZNF385BQ569K4 471 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 LCN10Q6JVE6 187 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ANKRD26P1Q6NSI1 321 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 C8orf82Q6P1X6 216 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 FAM199XQ6PEV8 388 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 BHLHB9Q6PI77 547 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 TMEM205Q6UW68 189 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ZNF621Q6ZSS3 439 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 COX15Q7KZN9 410 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 WFDC3Q8IUB2 231 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ZC3H7AQ8IWR0 971 aaKnown RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 NLGN4XQ8N0W4 816 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 MMP21Q8N119 569 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ARHGAP24Q8N264 748 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 LRRC25Q8N386 305 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 TRIML2Q8N7C3 387 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 POU5F2Q8N7G0 328 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 TMEM52Q8NDY8 209 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 NLGN4YQ8NFZ3 816 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 CTHRC1Q96CG8 243 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 KLHL29Q96CT2 875 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 SLC7A6OSQ96CW6 309 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 LRRC58Q96CX6 371 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 MISP3Q96FF7 219 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 PANX1Q96RD7 426 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 CSF3RQ99062 836 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 BTBD10Q9BSF8 475 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 PAIP1Q9H074 479 aaKnown RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 CHST8Q9H2A9 424 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 MMADHCQ9H3L0 296 aaPredicted RBP6.91□□□□□ -1.3
CD44-228ENST00000528455 GLIPR2Q9H4G4 154 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 C3orf14Q9HBI5 128 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ASCL3Q9NQ33 180 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 NECTIN3Q9NQS3 549 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 KCND3Q9UK17 655 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 CROTQ9UKG9 612 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 PCDHB10Q9UN67 800 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 ENTPD4Q9Y227 616 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 AP3M1Q9Y2T2 418 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 CLDN16Q9Y5I7 305 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms