RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ARAP1	Q96P48	1450 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553		A0A087WZY1	265 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553		A0A0U1RRA0	63 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	LOC390937	A0A1W2PQ73	354 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	YJEFN3	A6XGL0	299 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553		E9PAM4	449 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	FRAT2	O75474	233 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	SCGB2A1	O75556	95 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	IFNB1	P01574	187 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	FAM200B	P0CF97	657 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	GNS	P15586	552 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	AZU1	P20160	251 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	HSPA1L	P34931	641 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	MAGEA4	P43358	317 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	MTTP	P55157	894 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	PEX3	P56589	373 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	EXOSC7	Q15024	291 aa	Known RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	CCL14	Q16627	93 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	TMEM44	Q2T9K0	475 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	VWA2	Q5GFL6	755 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	DDI2	Q5TDH0	399 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	RTL6	Q6ICC9	239 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	CWC27	Q6UX04	472 aa	Known RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	NUFIP2	Q7Z417	695 aa	Known RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	YRDC	Q86U90	279 aa	Known RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	CACUL1	Q86Y37	369 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	CNPY4	Q8N129	248 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	MINDY2	Q8NBR6	621 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	DENND6B	Q8NEG7	585 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	PCNP	Q8WW12	178 aa	Known RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	ITLN1	Q8WWA0	313 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	TCP11	Q8WWU5	503 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	FCGR1B	Q92637	280 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	NCLN	Q969V3	563 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	TRIM44	Q96DX7	344 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	VPS39	Q96JC1	886 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	ERGIC2	Q96RQ1	377 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	WWP1	Q9H0M0	922 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	RIBC2	Q9H4K1	309 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF490	Q9ULM2	529 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-223	ENST00000526553	MGAT4A	Q9UM21	535 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	MGAT4B	Q9UQ53	548 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	ENTPD4	Q9Y227	616 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	OR1A2	Q9Y585	309 aa		3.56	□□□□□ -1.84
CD44-223	ENST00000526553	EIF4G3	O43432	1585 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553		A0A1B0GWJ7	208 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	SRRM4	A7MD48	611 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	KLLN	B2CW77	178 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	B4GAT1	O43505	415 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	KIAA0513	O60268	411 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CSDE1	O75534	798 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	IDH1	O75874	414 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	DIRAS3	O95661	229 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	AK1	P00568	194 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	KRT8	P05787	483 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	PROS1	P07225	676 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	FUT1	P19526	365 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	GLRA1	P23415	457 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	SPR	P35270	261 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	ACADSB	P45954	432 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	FHIT	P49789	147 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	RPS27A	P62979	156 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	ITPK1	Q13572	414 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CMPK2	Q5EBM0	449 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CDC42EP5	Q6NZY7	148 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	SERINC5	Q86VE9	423 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CERS5	Q8N5B7	392 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	BCORP1	Q8N888	145 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF540	Q8NDQ6	660 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	GMCL1P1	Q8NEA9	526 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	RHOXF1	Q8NHV9	184 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	GPR148	Q8TDV2	347 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	PINX1	Q96BK5	328 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	MRPL53	Q96EL3	112 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	C16orf58	Q96GQ5	468 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CXorf58	Q96LI9	332 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	THUMPD2	Q9BTF0	503 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	WRAP53	Q9BUR4	548 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	CCSER1	Q9C0I3	900 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	FAM124B	Q9H5Z6	455 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	COQ10B	Q9H8M1	238 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	ROPN1	Q9HAT0	212 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	VAT1L	Q9HCJ6	419 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	TECR	Q9NZ01	308 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	IL20RA	Q9UHF4	553 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	BCAP29	Q9UHQ4	241 aa		3.55	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF346	Q9UL40	294 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	DIMT1	Q9UNQ2	313 aa	Known RBP	3.55	□□□□□ -1.84
CD44-223	ENST00000526553	IFT140	Q96RY7	1462 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	NPC1L1	Q9UHC9	1359 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	FAM230A	A0A1W2PPH8	454 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	TMEM89	A2RUT3	159 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	OR5H15	A6NDH6	313 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF724	A8MTY0	619 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	BUB1	O43683	1085 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	LYN	P07948	512 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	NCF1	P14598	390 aa	Predicted RBP	3.54	□□□□□ -1.84
CD44-223	ENST00000526553	EZR	P15311	586 aa	Known RBP	3.54	□□□□□ -1.84
CD44-223	ENST00000526553	TNNI3	P19429	210 aa		3.54	□□□□□ -1.84
CD44-223	ENST00000526553	GPX3	P22352	226 aa		3.54	□□□□□ -1.84

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