RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OR52B6Q8NGF0 335 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 PYROXD1Q8WU10 500 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 HSPBAP1Q96EW2 488 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 COX4I2Q96KJ9 171 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 MARK4Q96L34 752 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SECISBP2Q96T21 854 aaKnown RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 PIGQQ9BRB3 760 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 PELOQ9BRX2 385 aaKnown RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 RBM24Q9BX46 236 aaKnown RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 OR2B2Q9GZK3 357 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 TSPYL1Q9H0U9 437 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SERHLQ9NQF3 203 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 LYARQ9NX58 379 aaKnown RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 EHD3Q9NZN3 535 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.97□□□□□ -0.331e-7■■■□□ 15
CPSF1-201ENST00000526271 V9GYY5 206 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 MXRA5Q9NR99 2828 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 SH3D21A4FU49 640 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ICOSLGO75144 302 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 CBX7O95931 251 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 LTA4HP09960 611 aaKnown RBP12.96□□□□□ -0.33
CPSF1-201ENST00000526271 CPN1P15169 458 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 EPB42P16452 691 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 CNTFP26441 200 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 BUD31P41223 144 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-201ENST00000526271 CLDN15P56746 228 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 CLDN18P56856 261 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PFKFB4Q16877 469 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PRICKLE4Q2TBC4 344 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 LIPJQ5W064 366 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 C3orf62Q6ZUJ4 267 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 GALNT12Q8IXK2 581 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PM20D2Q8IYS1 436 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 GCNT2Q8N0V5 402 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PLD6Q8N2A8 252 aaKnown RBP12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PPP1R14CQ8TAE6 165 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 RNF138Q8WVD3 245 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 DACH2Q96NX9 599 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 NSUN5Q96P11 429 aaKnown RBP12.96□□□□□ -0.33
CPSF1-201ENST00000526271 UCN2Q96RP3 112 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 FMO2Q99518 471 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ITPAQ9BY32 194 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 PARD6BQ9BYG5 372 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ANKRA2Q9H9E1 313 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ZBTB26Q9HCK0 441 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 MAT2BQ9NZL9 334 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ADGRE2Q9UHX3 823 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 ADAM21Q9UKJ8 722 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 RAB21Q9UL25 225 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 TESMINQ9Y4I5 508 aa12.96□□□□□ -0.33
CPSF1-201ENST00000526271 A8MXE2 369 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PPP6CO00743 305 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 TP53I11O14683 189 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PPM1BO75688 479 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 RCBTB2O95199 551 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 TUBBP07437 444 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 CPMP14384 443 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PTX3P26022 381 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 TLX1P31314 330 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 MAGEA4P43358 317 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 MASP1P48740 699 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 LHX2P50458 406 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 XKP51811 444 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 B3GALT5-AS1P59052 145 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 VSNL1P62760 191 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 TRAF3Q13114 568 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 GTF2H2Q13888 395 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PCBP2Q15366 365 aaKnown RBP eCLIP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 OR52E8Q6IFG1 317 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 GTF2H2CQ6P1K8 395 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 RPS27LQ71UM5 84 aaKnown RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PACS2Q86VP3 889 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 MYLK4Q86YV6 388 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PPM1NQ8N819 430 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 C17orf47Q8NEP4 570 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 IGFBPL1Q8WX77 278 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 INTS12Q96CB8 462 aaKnown RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 HS3ST6Q96QI5 342 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 MRPL1Q9BYD6 325 aaKnown RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 ACTR8Q9H981 624 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 NMRAL1Q9HBL8 299 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 BEX4Q9NWD9 120 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PSD3Q9NYI0 1048 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 C6orf203Q9P0P8 240 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-201ENST00000526271 HEY2Q9UBP5 337 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 FBXL2Q9UKC9 423 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 MAPRE3Q9UPY8 281 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 PCDHGA11Q9Y5H2 935 aa12.95□□□□□ -0.34
CPSF1-201ENST00000526271 TRIM64A6NGJ6 449 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 TRIM64BA6NI03 449 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 H7C1Q1 480 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 FOXE1O00358 373 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-201ENST00000526271 CTIFO43310 598 aaKnown RBP12.94□□□□□ -0.34
CPSF1-201ENST00000526271 DYRK3O43781 588 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 ACTL6AO96019 429 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 S100BP04271 92 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-201ENST00000526271 C2P06681 752 aa12.94□□□□□ -0.34
CPSF1-201ENST00000526271 KLK1P06870 262 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms