RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KCNK2O95069 426 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 AIFM1O95831 613 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 CEACAM5P06731 702 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 TNFSF8P32971 234 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 WASP42768 502 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 UAP1L1Q3KQV9 507 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 NCCRP1Q6ZVX7 275 aaPredicted RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 PHC2Q8IXK0 858 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 OR52I1Q8NGK6 324 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 ZNF582Q96NG8 517 aaPredicted RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 C1QTNF2Q9BXJ5 285 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 SACM1LQ9NTJ5 587 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 ITGB1BP2Q9UKP3 347 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 CES1P1Q9UKY3 287 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 LIPT1Q9Y234 373 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 PRR19A6NJB7 356 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 ASNA1O43681 348 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 APODP05090 189 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 COPZ1P61923 177 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 RUNX1T1Q06455 604 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 C3orf38Q5JPI3 329 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 ACSM5Q6NUN0 579 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 USP30Q70CQ3 517 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 GNPDA2Q8TDQ7 276 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 OTUB1Q96FW1 271 aaPredicted RBP19.98■□□□□ 0.79
VPS28-205ENST00000526204 MRPS18AQ9NVS2 196 aaKnown RBP19.98■□□□□ 0.79
VPS28-205ENST00000526204 SLC13A4Q9UKG4 626 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 FBXW2Q9UKT8 454 aa19.98■□□□□ 0.79
VPS28-205ENST00000526204 OR52A4PA6NMU1 304 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 C4orf51C9J302 202 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 F3P13726 295 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 CMPK1P30085 196 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 SNAPC1Q16533 368 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 TMEM107Q6UX40 140 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 AKAP14Q86UN6 197 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 FGF11Q92914 225 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 MACROD1Q9BQ69 325 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 STATHP02808 62 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 MYL12AP19105 171 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 IFNA8P32881 189 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 STXBP1P61764 594 aaKnown RBP19.97■□□□□ 0.79
VPS28-205ENST00000526204 TGM3Q08188 693 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 RAB40BQ12829 278 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 SELENBP1Q13228 472 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 GPM6BQ13491 265 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 ZNF311Q5JNZ3 666 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 DESI1Q6ICB0 168 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 FBXO46Q6PJ61 603 aaPredicted RBP19.97■□□□□ 0.79
VPS28-205ENST00000526204 OLIG3Q7RTU3 272 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 FAM20CQ8IXL6 584 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 MFSD9Q8NBP5 474 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 TEX47Q8TBZ9 253 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 KLK6Q92876 244 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 GPA33Q99795 319 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 PRRG3Q9BZD7 231 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 BARHL1Q9BZE3 327 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 SNX7Q9UNH6 387 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 CAB39Q9Y376 341 aaPredicted RBP19.97■□□□□ 0.79
VPS28-205ENST00000526204 PCDHGA4Q9Y5G9 962 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 HEBP2Q9Y5Z4 205 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 TRPM6Q9BX84 2022 aa19.97■□□□□ 0.79
VPS28-205ENST00000526204 LAMA3Q16787 3333 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 RGS5O15539 181 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 MYOGP15173 224 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 CPEP16870 476 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 TPTEP56180 551 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 TAS2R41P59536 307 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 LRRC32Q14392 662 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 TRAM2Q15035 370 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 CEBPEQ15744 281 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ZNF750Q32MQ0 723 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 LIPKQ5VXJ0 399 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 C18orf63Q68DL7 685 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 SLC27A4Q6P1M0 643 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 GDPD3Q7L5L3 318 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 YAF2Q8IY57 180 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 FBXL6Q8N531 539 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 TMEM163Q8TC26 289 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 C16orf58Q96GQ5 468 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 WDFY2Q96P53 400 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 OR7D2Q96RA2 312 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 SDHCQ99643 169 aaPredicted RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 C1QTNF7Q9BXJ2 289 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ANKRD19PQ9H560 264 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 GPSM3Q9Y4H4 160 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 A0A087WUU8 490 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 IQCMA0A1B0GVH7 501 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 PROM1O43490 865 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 CYP7B1O75881 506 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ALPPP05187 535 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ALPPL2P10696 532 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 BNC1Q01954 994 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 RPE65Q16518 533 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 C2orf27AQ580R0 203 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ATAD3BQ5T9A4 648 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ZNF776Q68DI1 518 aaPredicted RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 CCBE1Q6UXH8 406 aaPredicted RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 SLC36A4Q6YBV0 504 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 MRGPREQ86SM8 312 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 TMEM145Q8NBT3 493 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms