RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CLDN14O95500 239 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 PCSK2P16519 638 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 NME2P22392 152 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 CYB561P49447 251 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 GPR143P51810 404 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 HSF1Q00613 529 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 PTGR1Q14914 329 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 MAPKAPK3Q16644 382 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZNF750Q32MQ0 723 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 SLC25A25Q6KCM7 469 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 OGFOD2Q6N063 350 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 RNF111Q6ZNA4 994 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 FAM47EQ6ZV65 393 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 RPS19BP1Q86WX3 136 aaKnown RBP9.38□□□□□ -0.91
VPS28-204ENST00000526054 SIAH3Q8IW03 269 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 OR5L2Q8NGL0 311 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 OR8K3Q8NH51 312 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 CLHC1Q8NHS4 586 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZFP28Q8NHY6 868 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZNF675Q8TD23 568 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZNF721Q8TF20 911 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 GFM2Q969S9 779 aaKnown RBP9.38□□□□□ -0.91
VPS28-204ENST00000526054 TMEM125Q96AQ2 219 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 MTERF3Q96E29 417 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 SENP5Q96HI0 755 aaPredicted RBP9.38□□□□□ -0.91
VPS28-204ENST00000526054 EGLN2Q96KS0 407 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZNF681Q96N22 645 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 BRINP2Q9C0B6 783 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 TAS2R7Q9NYW3 318 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 BAIAP2L1Q9UHR4 511 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 USH1CQ9Y6N9 552 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 GOLGA8QA0A0J9YX86 632 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 GOLGA8OA6NCC3 632 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 OR6C76A6NM76 312 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 GOLGA8NF8WBI6 632 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 C19orf84I3L1E1 186 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 CDK2AP1O14519 115 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 SCAMP2O15127 329 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 PDPK1O15530 556 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 ASNA1O43681 348 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 DIAPH2O60879 1101 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 SLITRK5O94991 958 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 TGDSO95455 350 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 IGKV3-11P04433 115 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 G6PDP11413 515 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 POU3F2P20265 443 aaPredicted RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 PRPS1L1P21108 318 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 EPHA3P29320 983 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 MPIP34949 423 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 MDH1P40925 334 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 NCBP2P52298 156 aaKnown RBP eCLIP9.37□□□□□ -0.915e-6■■□□□ 11.5
VPS28-204ENST00000526054 GYS2P54840 703 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 MLF1P58340 268 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 PDE7AQ13946 482 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 CDSNQ15517 529 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 CEBPEQ15744 281 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 ZNF468Q5VIY5 522 aaPredicted RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 NXNQ6DKJ4 435 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 FAM180BQ6P0A1 224 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 DGAT2L6Q6ZPD8 337 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 NCCRP1Q6ZVX7 275 aaPredicted RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 ACAD11Q709F0 780 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 LARP4Q71RC2 724 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS28-204ENST00000526054 SLC29A4Q7RTT9 530 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 SPATA19Q7Z5L4 167 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 CCDC116Q8IYX3 515 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 EID3Q8N140 333 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 VWA5B2Q8N398 1253 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 CPSF7Q8N684 471 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 NATD1Q8N6N6 113 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 OR7G1Q8NGA0 311 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 OR9A2Q8NGT5 310 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 NUBPLQ8TB37 319 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 ACTRT2Q8TDY3 377 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 MAELQ96JY0 434 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 PRPF18Q99633 342 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 WDR55Q9H6Y2 383 aaPredicted RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 ATAD3AQ9NVI7 634 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 SH3BP4Q9P0V3 963 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 ATP6V1HQ9UI12 483 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 ZNF223Q9UK11 482 aaPredicted RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 EXO1Q9UQ84 846 aaKnown RBP9.37□□□□□ -0.91
VPS28-204ENST00000526054 CFL2Q9Y281 166 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 PDZD2O15018 2839 aa9.37□□□□□ -0.91
VPS28-204ENST00000526054 F8P00451 2351 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 ADGRG4Q8IZF6 3080 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 MYO1GB0I1T2 1018 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 HRKO00198 91 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 PRRG2O14669 202 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 TFECO14948 347 aaPredicted RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 ZNHIT1O43257 154 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 BCAS2O75934 225 aaPredicted RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 CT62P0C5K7 136 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 SSTR2P30874 369 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 SSTR4P31391 388 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 CLNS1AP54105 237 aaKnown RBP9.36□□□□□ -0.91
VPS28-204ENST00000526054 DIO3P55073 304 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 CLDN8P56748 225 aa9.36□□□□□ -0.91
VPS28-204ENST00000526054 C21orf58P58505 322 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms