RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ZKSCAN8Q15776 578 aaPredicted RBP3.19□□□□□ -1.9
CD44-215ENST00000525241 GCNT7Q6ZNI0 430 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 ADAMTSL2Q86TH1 951 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 YRDCQ86U90 279 aaKnown RBP3.19□□□□□ -1.9
CD44-215ENST00000525241 PYROXD2Q8N2H3 581 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 C11orf42Q8N5U0 333 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 COLGALT1Q8NBJ5 622 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 VN1R17PQ8TDU5 208 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 DEFB118Q96PH6 123 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 CBWD1Q9BRT8 395 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 ACAT2Q9BWD1 397 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 TSPY26PQ9H489 355 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 ESM1Q9NQ30 184 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 PRODH2Q9UF12 536 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 MIOXQ9UGB7 285 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 RNF115Q9Y4L5 304 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 KIF25-AS1Q9Y6Z4 181 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 A0A0U1RRA0 63 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 TMEM89A2RUT3 159 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 PDLIM1O00151 329 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 HSF2BPO75031 334 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 GJB5O95377 273 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 ECDO95905 644 aaPredicted RBP3.18□□□□□ -1.9
CD44-215ENST00000525241 HOXB7P09629 217 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 PVRP15151 417 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 HLA-DPA1P20036 260 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 COPB2P35606 906 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 MDH2P40926 338 aaKnown RBP3.18□□□□□ -1.9
CD44-215ENST00000525241 MEOX2P50222 304 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 SGSHP51688 502 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 SSTP61278 116 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 CBX3Q13185 183 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 TGIF1Q15583 401 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 OLFML2AQ68BL7 652 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 CWC27Q6UX04 472 aaKnown RBP3.18□□□□□ -1.9
CD44-215ENST00000525241 DPY19L2P2Q6ZN68 376 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 EXOC6Q8TAG9 804 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 ATP6V0A1Q93050 837 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 LHX4Q969G2 390 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 CNOT6LQ96LI5 555 aaKnown RBP3.18□□□□□ -1.9
CD44-215ENST00000525241 SIGLEC12Q96PQ1 595 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 CCT8L2Q96SF2 557 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 ALG9Q9H6U8 611 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 TIGARQ9NQ88 270 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 B4GALT7Q9UBV7 327 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 KLF2Q9Y5W3 355 aaPredicted RBP3.18□□□□□ -1.9
CD44-215ENST00000525241 ZNF318Q5VUA4 2279 aa3.18□□□□□ -1.9
CD44-215ENST00000525241 IGKV6D-41A0A0C4DH26 115 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 IGHV3-35A0A0C4DH35 117 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 EFCAB7A8K855 629 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 PGAM2P15259 253 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 IGFBP5P24593 272 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 ACP1P24666 158 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 MAGEA9P43362 315 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 FNTAP49354 379 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 SLC25A1P53007 311 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 RAG2P55895 527 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 IGLV3-21P80748 117 aaPredicted RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 UBXN1Q04323 297 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 SMC1AQ14683 1233 aaKnown RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 SLC10A1Q14973 349 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 ZNF699Q32M78 642 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 FHL5Q5TD97 284 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 C1orf186Q6ZWK4 172 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 ADGRD2Q7Z7M1 963 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 RANBP3LQ86VV4 465 aaPredicted RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 AMZ2Q86W34 360 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 MLKLQ8NB16 471 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 OR4F17Q8NGA8 305 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 OR52E1Q8NGJ3 308 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 FNDC8Q8TC99 324 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 URGCPQ8TCY9 931 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 DLX4Q92988 240 aaPredicted RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 C9orf85Q96MD7 179 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 OR4F4Q96R69 305 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 COQ7Q99807 217 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 PAXXQ9BUH6 204 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 APOOQ9BUR5 198 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 DEFB126Q9BYW3 111 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 DDX47Q9H0S4 455 aaKnown RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 SIRPDQ9H106 197 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 FAM124BQ9H5Z6 455 aaPredicted RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 PURGQ9UJV8 347 aaKnown RBP3.17□□□□□ -1.9
CD44-215ENST00000525241 RALGAPA1Q6GYQ0 2036 aa3.17□□□□□ -1.9
CD44-215ENST00000525241 A0A0J9YVX5 310 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 MFSD2BA6NFX1 497 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 SLC9B1P1A6NJY1 282 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 CFLARO15519 480 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 BUB1O43683 1085 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 GSTA1P08263 222 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 GNSP15586 552 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 GDF1P27539 372 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 TMOD1P28289 359 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 PTPN4P29074 926 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 OR1D4P47884 311 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 POU3F4P49335 361 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 ARHGDIBP52566 201 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 CASP9P55211 416 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms