RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 RBM18Q96H35 190 aaKnown RBP4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 ERP44Q9BS26 406 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 FGFBP2Q9BYJ0 223 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 POLR1EQ9GZS1 481 aaKnown RBP4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 RAB33BQ9H082 229 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 SP140LQ9H930 580 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 ZDHHC18Q9NUE0 388 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 KLRF1Q9NZS2 232 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 TBK1Q9UHD2 729 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 RNF6Q9Y252 685 aa4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 MRPS7Q9Y2R9 242 aaKnown RBP4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 SF3B1O75533 1304 aaKnown RBP eCLIP4.41□□□□□ -1.7
HMGB1P46-201ENST00000520062 TTC26A0AVF1 554 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 LRIT2A6NDA9 550 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 H0YCG3 227 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 K7EQG2 157 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 PDLIM1O00151 329 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 NTN3O00634 580 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZNF749O43361 778 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 SNAP91O60641 907 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZNF821O75541 412 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 GOT2P00505 430 aaKnown RBP4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CHRNA1P02708 482 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CCDC159P0C7I6 412 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 PRG2P13727 222 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CALML3P27482 149 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 PSMA5P28066 241 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 HNMTP50135 292 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 ARFIP1P53367 373 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 NOP14P78316 857 aaKnown RBP4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 EXOSC2Q13868 293 aaKnown RBP4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 TRIP10Q15642 601 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CDKN3Q16667 212 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 NCR3LG1Q68D85 454 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 LPCAT2Q7L5N7 544 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 TMEM110Q86TL2 294 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 LRRTM1Q86UE6 522 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 LUZP1Q86V48 1076 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CENPSQ8N2Z9 138 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZNF248Q8NDW4 579 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 OR5AU1Q8NGC0 362 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 OR2T34Q8NGX1 318 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 TESK2Q96S53 571 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 TBCDQ9BTW9 1192 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 TSPY26PQ9H489 355 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 RMND5AQ9H871 391 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 AGPAT5Q9NUQ2 364 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 GHRLQ9UBU3 117 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 RARRES3Q9UL19 164 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 DHRS7Q9Y394 339 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 RNF115Q9Y4L5 304 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 CARMIL1Q5VZK9 1371 aa4.4□□□□□ -1.71
HMGB1P46-201ENST00000520062 GPR89AB7ZAQ6 455 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ARHGEF9O43307 516 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 GMFGO60234 142 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SPAG6O75602 509 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ANP32DO95626 131 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 OAS1P00973 400 aaKnown RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 GPR89BP0CG08 455 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 TRIM49P0CI25 452 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 TRIM49CP0CI26 452 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 UQCRBP14927 111 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 DRD5P21918 477 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 UGT1A4P22310 534 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 RFC2P35250 354 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 BNIP1Q12981 228 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SNTB2Q13425 540 aaKnown RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ATAD3BQ5T9A4 648 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 CES3Q6UWW8 571 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 TMEM184AQ6ZMB5 413 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 LCA5Q86VQ0 697 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZDHHC21Q8IVQ6 265 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 EFCAB13Q8IY85 973 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SAMD12Q8N8I0 201 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 AQP11Q8NBQ7 271 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZNRF1Q8ND25 227 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 PRSS33Q8NF86 280 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 BEST4Q8NFU0 473 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 LRRC15Q8TF66 581 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SLC5A11Q8WWX8 675 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ZNF606Q8WXB4 792 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 GTF3AQ92664 365 aaKnown RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 LHX4Q969G2 390 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 HPDLQ96IR7 371 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 PRICKLE1Q96MT3 831 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 OPRPNQ99935 248 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 APOOQ9BUR5 198 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 ST6GALNAC5Q9BVH7 336 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 UPF3AQ9H1J1 476 aaKnown RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 THEGQ9P2T0 379 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 THAP10Q9P2Z0 257 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SEC14L4Q9UDX3 406 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SPATA2Q9UM82 520 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SNX6Q9UNH7 406 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 KLF2Q9Y5W3 355 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 CCDC7Q96M83 1385 aa4.39□□□□□ -1.71
HMGB1P46-201ENST00000520062 SYNJ2BP-COX16A0A087WUM0 186 aa4.38□□□□□ -1.71
HMGB1P46-201ENST00000520062 TRGV8A0A0C4DH27 118 aa4.38□□□□□ -1.71
HMGB1P46-201ENST00000520062 A0A0J9YVX5 310 aa4.38□□□□□ -1.71
HMGB1P46-201ENST00000520062 WASHC1A8K0Z3 465 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms