RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZFYVE21Q9BQ24 234 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 UNKLQ9H9P5 680 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC6A20Q9NP91 592 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 C3orf18Q9UK00 162 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 TNRC6BQ9UPQ9 1833 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PEX12O00623 359 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 GSC2O15499 205 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SLCO2B1O94956 709 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ZWINTO95229 277 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 FABP1P07148 127 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 S100A7P31151 101 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 XCR1P46094 333 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 POU4F1Q01851 419 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PAGE2BQ5JRK9 111 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 TCHHL1Q5QJ38 904 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PLEKHS1Q5SXH7 462 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 LANCL3Q6ZV70 420 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ASB11Q8WXH4 323 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 EXOSC8Q96B26 276 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 LIN37Q96GY3 246 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 RBBP8Q99708 897 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 COPS7BQ9H9Q2 264 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 IFT46Q9NQC8 304 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PCDHB16Q9NRJ7 776 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CCDC59Q9P031 241 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 WBP11Q9Y2W2 641 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 YARS2Q9Y2Z4 477 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 NINQ8N4C6 2090 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A088AWK7 358 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 MED26O95402 600 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 APOC1P02654 83 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PPP2R1BP30154 601 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PKLRP30613 574 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 EIF3IQ13347 325 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 IL10RAQ13651 578 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 NFYCQ13952 458 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 GK3PQ14409 553 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 IRAK1BP1Q5VVH5 260 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 B3GNTL1Q67FW5 361 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 LSRQ86X29 649 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CDYL2Q8N8U2 506 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 OR10Z1Q8NGY1 313 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 OR8K5Q8NH50 307 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 GTF2H4Q92759 462 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PPWD1Q96BP3 646 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF501Q96CX3 271 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PTCD3Q96EY7 689 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 REXO5Q96IC2 774 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ART5Q96L15 291 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 VRK1Q99986 396 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 KLHL31Q9H511 634 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 IMPAD1Q9NX62 359 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 OPTCQ9UBM4 332 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 NAALAD2Q9Y3Q0 740 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 AP4B1Q9Y6B7 739 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 AGAP14A8MT82 685 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 SMAD9O15198 467 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CFLARO15519 480 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ERAL1O75616 437 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 GGT5P36269 586 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 GRB7Q14451 532 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC14A2Q15849 920 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM83EQ2M2I3 478 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 HYAL4Q2M3T9 481 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PAN3Q58A45 887 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ARMCX4Q5H9R4 360 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 FGD3Q5JSP0 725 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ERICH5Q6P6B1 374 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ASRGL1Q7L266 308 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TSPYL5Q86VY4 417 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 UBASH3BQ8TF42 649 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC22A18Q96BI1 424 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PTCHD1Q96NR3 888 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CPNE1Q99829 537 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TGIF2Q9GZN2 237 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ZBTB20Q9HC78 741 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF160Q9HCG1 818 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 DIABLOQ9NR28 239 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TNFRSF10DQ9UBN6 386 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TAGLN3Q9UI15 199 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TMEM184BQ9Y519 407 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PLXND1Q9Y4D7 1925 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 MYO9AB2RTY4 2548 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 A0A1B0GV90 55 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 H7C1Q1 480 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 LDLRAD4O15165 306 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 STK16O75716 305 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CCNDBP1O95273 360 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC35G6P0C7Q6 338 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 TEAD1P28347 426 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 FOLR3P41439 243 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 DCDP81605 110 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 RPA4Q13156 261 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ABRAXAS2Q15018 415 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 NSDHLQ15738 373 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 BTBD16Q32M84 506 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CYP27C1Q4G0S4 372 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 FCRL6Q6DN72 434 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 FBXO42Q6P3S6 717 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms