RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ITGAMP11215 1152 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 FUT4P22083 530 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 IMPA1P29218 277 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CX3CR1P49238 355 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 PRKCZQ05513 592 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 KIAA0141Q14154 515 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 MSMO1Q15800 293 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TMEM31Q5JXX7 168 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SSX7Q7RTT5 188 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 C1orf87Q8N0U7 546 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 C15orf54Q8N8G6 183 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 OR4K1Q8NGD4 311 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 OR1S1Q8NH92 325 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 PPP1R35Q8TAP8 253 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 FRS2Q8WU20 508 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 FUBP3Q96I24 572 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 WDR26Q9H7D7 661 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 YTHDF2Q9Y5A9 579 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CYB5BO43169 146 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CLEC3AO75596 197 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SIX3O95343 332 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CORO1AP31146 461 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SNCAP37840 140 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CHRNA4P43681 627 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 BTG1P62324 171 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CES4AQ5XG92 561 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 ZC3H14Q6PJT7 736 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SFXN5Q8TD22 340 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TFAP2CQ92754 450 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CORO2AQ92828 525 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 RAB3CQ96E17 227 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 MOCOSQ96EN8 888 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 P2RY13Q9BPV8 354 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF442Q9H7R0 627 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 OSER1Q9NX31 292 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 ZMAT5Q9UDW3 170 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 RIC1Q4ADV7 1423 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CD300LBA8K4G0 201 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 LOC730098B7Z3J9 87 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 BLOC1S5-TXNDC5H3BN57 136 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 SYN3O14994 580 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 DPM1O60762 260 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PRPH2P23942 346 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CALCRP30988 508 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ACTR1BP42025 376 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 TAF10Q12962 218 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CHST9Q7L1S5 443 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 BAGE3Q86Y29 109 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 BAGE2Q86Y30 109 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 C2CD4AQ8NCU7 369 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 OR9I1Q8NGQ6 314 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ZCCHC10Q8TBK6 192 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 GPR148Q8TDV2 347 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 HMCESQ96FZ2 354 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CMSS1Q9BQ75 279 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 GBA2Q9HCG7 927 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ACSS2Q9NR19 701 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 SERTAD4Q9NUC0 356 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A1B0GVT2 93 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 MEIS2O14770 477 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ERI3O43414 337 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 BRINP1O60477 761 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 MT-CYBP00156 380 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PLGP00747 810 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 GDF10P55107 478 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 LRRC32Q14392 662 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 RBMS2Q15434 407 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 FAM214AQ32MH5 1076 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PHYHD1Q5SRE7 291 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PLEKHS1Q5SXH7 462 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 DBF4BQ8NFT6 615 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 HDHD5Q9BXW7 423 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 MMP28Q9H239 520 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 LYRM2Q9NU23 88 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 YARS2Q9Y2Z4 477 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ENPP4Q9Y6X5 453 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A1W2PQ09 198 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ANKRD34BA5PLL1 514 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 C17orf112F2Z3M2 114 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 AHSGP02765 367 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CPN1P15169 458 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 TNFSF9P41273 254 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PPP1R8Q12972 351 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CHRNA6Q15825 494 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 OR13C3Q8NGS6 347 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 IL31RAQ8NI17 732 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC5A11Q8WWX8 675 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 RBMXL1Q96E39 390 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF681Q96N22 645 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PTCHD1Q96NR3 888 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PTPN18Q99952 460 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 DHRS9Q9BPW9 319 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 PINK1Q9BXM7 581 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 HRH4Q9H3N8 390 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 IL26Q9NPH9 171 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CASZ1Q86V15 1759 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 SMIM35A0A1B0GVV1 85 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 CBY3A6NI87 242 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 F6UZH7 168 aa10.72□□□□□ -0.69
LIMCH1-217ENST00000512946 ARHGAP33O14559 1287 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms