RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM47EQ6ZV65 393 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 GPR141Q7Z602 305 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 GLRX5Q86SX6 157 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 NLRP14Q86W24 1093 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 CEND1Q8N111 149 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 SLC43A2Q8N370 569 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 GPR137CQ8N3F9 429 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 SPC24Q8NBT2 197 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 RMDN1Q96DB5 314 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 ARL5BQ96KC2 179 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 RPGRIP1Q96KN7 1286 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 LRRC3BQ96PB8 259 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 JPH2Q9BR39 696 aaPredicted RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 PARD6BQ9BYG5 372 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 STMN4Q9H169 189 aaPredicted RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 TRPV6Q9H1D0 765 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 FZD8Q9H461 694 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 FN3KQ9H479 309 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 CLSTN2Q9H4D0 955 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 ZWILCHQ9H900 591 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 VPS37BQ9H9H4 285 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 SPG21Q9NZD8 308 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 EMC3Q9P0I2 261 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 MBD2Q9UBB5 411 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 LCMT1Q9UIC8 334 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 LAMP5Q9UJQ1 280 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 RUVBL2Q9Y230 463 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 TIMM22Q9Y584 194 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 LIPGQ9Y5X9 500 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 BZW2Q9Y6E2 419 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 SMG6Q86US8 1419 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 MIA2Q96PC5 1412 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 MAP3K19Q56UN5 1328 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 CECR2Q9BXF3 1484 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 CCNB3Q8WWL7 1395 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 WRNQ14191 1432 aaPredicted RBP eCLIP1.61□□□□□ -2.15
NUP54-208ENST00000508604 YEATS2Q9ULM3 1422 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 C2orf92A0A1B0GVN3 265 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 LRRD1A4D1F6 860 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OR6C65A6NJZ3 312 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 RNF113AO15541 343 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 MLNRO43193 412 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SMIM24O75264 130 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SLU7O95391 586 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 GGPS1O95749 300 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ECDO95905 644 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 FCGR3AP08637 254 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PNMA6AP0CW24 399 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 EEF2P13639 858 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 STMN1P16949 149 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF3P17036 446 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 MUTP22033 750 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TRIM23P36406 574 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V1E1P36543 226 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ACADSBP45954 432 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 HAAOP46952 286 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ETV1P50549 477 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 MRPS15P82914 257 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF33BQ06732 778 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CD47Q08722 323 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 AP1B1Q10567 949 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CETN1Q12798 172 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CBX3Q13185 183 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PPP2R5CQ13362 524 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 MSLNQ13421 630 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 IDI1Q13907 227 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF273Q14593 569 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TGIF1Q15583 401 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SNCBQ16143 134 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NDUFA5Q16718 116 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 KLHL40Q2TBA0 621 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CCDC40Q4G0X9 1142 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PAN3Q58A45 887 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 BEND6Q5SZJ8 279 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 MOXD1Q6UVY6 613 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 KDELC1Q6UW63 502 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SLFN11Q7Z7L1 901 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TBC1D21Q8IYX1 336 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 LINC01555Q8NAE3 123 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF540Q8NDQ6 660 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OCC1Q8TAD7 63 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 DYDC1Q8WWB3 177 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 IFT81Q8WYA0 676 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SMPDL3AQ92484 453 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 MRPS27Q92552 414 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 SPSB1Q96BD6 273 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SGK3Q96BR1 496 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NTNG2Q96CW9 530 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 C11orf24Q96F05 449 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 CNDP2Q96KP4 475 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 CEP19Q96LK0 163 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CATSPER2Q96P56 530 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 GAL3ST1Q99999 423 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 DESI2Q9BSY9 194 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 IKZF5Q9H5V7 419 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PSTPIP2Q9H939 334 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 C12orf10Q9HB07 376 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 AATFQ9NY61 560 aaKnown RBP eCLIP1.61□□□□□ -2.15
NUP54-208ENST00000508604 VPS18Q9P253 973 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 RCOR3Q9P2K3 495 aaPredicted RBP1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms