RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CLVS1Q8IUQ0 354 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CTAGE3PQ8IX95 158 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ANKFN1Q8N957 763 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 C7orf57Q8NEG2 295 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 TBC1D15Q8TC07 691 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 RDH11Q8TC12 318 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 POP5Q969H6 163 aaKnown RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ASB9Q96DX5 294 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 FAR2Q96K12 515 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CLPTM1LQ96KA5 538 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 C5orf34Q96MH7 638 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PTCHD1Q96NR3 888 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ARPC5LQ9BPX5 153 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SPNS1Q9H2V7 528 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 RHBGQ9H310 441 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 MUC13Q9H3R2 512 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 TPK1Q9H3S4 243 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SP140LQ9H930 580 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CAB39LQ9H9S4 337 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 NMRAL1Q9HBL8 299 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OLAHQ9NV23 265 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 DNAJC11Q9NVH1 559 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ABI3Q9P2A4 366 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CRNNQ9UBG3 495 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ERRFI1Q9UJM3 462 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 DOPEY1Q5JWR5 2465 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 A0A1B0GUH1 482 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 TCRBV16S1A1N1A0A5B0 115 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 FAM172BPA6NC97 362 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF860A6NHJ4 632 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ANKDD1BA6NHY2 528 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SAGE2PA6NJ88 616 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CLDN25C9JDP6 229 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 E2F3O00716 465 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 B4GALT2O60909 372 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 DNAJB6O75190 326 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PIAS1O75925 651 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CLPXO76031 633 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 RASAL1O95294 804 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 KRT75O95678 551 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 BCL10O95999 233 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 LDLRP01130 860 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 M6PRP20645 277 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF10P21506 573 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SERPINB5P36952 375 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CPA2P48052 419 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 KCNC1P48547 511 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SLC1A6P48664 564 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 HSD17B7P56937 341 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SLC26A5P58743 744 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 TAS2R50P59544 299 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 RAB8AP61006 207 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SLC25A3Q00325 362 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 STX5Q13190 355 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 OR4D1Q15615 310 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 HIST2H2ACQ16777 129 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 LRRC36Q1X8D7 754 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PAGE2BQ5JRK9 111 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CCNJQ5T5M9 372 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 HIST2H2AA3Q6FI13 130 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PAPD4Q6PIY7 484 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 HACD2Q6Y1H2 254 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 RNF111Q6ZNA4 994 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CAPN12Q6ZSI9 719 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 RPS19BP1Q86WX3 136 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 LACC1Q8IV20 430 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SHISA5Q8N114 240 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ARMC10Q8N2F6 343 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SPATA6LQ8N4H0 392 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SLC5A8Q8N695 610 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 HORMAD2Q8N7B1 307 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PPM1NQ8N819 430 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 SRFBP1Q8NEF9 429 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 RHEBL1Q8TAI7 183 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ELP5Q8TE02 316 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 NR4A3Q92570 626 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 UBE2E3Q969T4 207 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 GAL3ST3Q96A11 431 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 C12orf43Q96C57 262 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 MS4A6EQ96DS6 147 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 VMP1Q96GC9 406 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 MED30Q96HR3 178 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 TAAR6Q96RI8 345 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 UTP23Q9BRU9 249 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 C9orf16Q9BUW7 83 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 EFCAB11Q9BUY7 163 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CD244Q9BZW8 370 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 KLHL31Q9H511 634 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 CXorf21Q9HAI6 301 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ARMC1Q9NVT9 282 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PLEKHB1Q9UF11 243 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF490Q9ULM2 529 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 PPIEQ9UNP9 301 aaKnown RBP7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ACOT9Q9Y305 439 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 MMACHCQ9Y4U1 282 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 ICE1Q9Y2F5 2266 aa7.49□□□□□ -1.21
SCN1A-207ENST00000507401 IGKV3D-11A0A0A0MRZ8 115 aa7.48□□□□□ -1.21
SCN1A-207ENST00000507401 NCF1BA6NI72 391 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-207ENST00000507401 CYSRT1A8MQ03 144 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms