RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GPX3P22352 226 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 GPX6P59796 221 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 MAP4K2Q12851 820 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 DLG1Q12959 904 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 TSNAXIP1Q2TAA8 658 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 EIPR1Q53HC9 387 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 P4HA3Q7Z4N8 544 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 GRAMD2AQ8IUY3 354 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PRR22Q8IZ63 422 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 SPATA4Q8NEY3 305 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 ADCY4Q8NFM4 1077 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 LINC01560Q8TB33 94 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PIGTQ969N2 578 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 OMA1Q96E52 524 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 LRRC1Q9BTT6 524 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 NTMT1Q9BV86 223 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 NOL11Q9H8H0 719 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PFDN4Q9NQP4 134 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 GIMAP4Q9NUV9 329 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 JKAMPQ9P055 326 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PACSIN3Q9UKS6 424 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 SNX6Q9UNH7 406 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 ABCA4P78363 2273 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 MTORP42345 2549 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PRAMEF25A6NGN4 478 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 ERAL1O75616 437 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 RCBTB2O95199 551 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 CLPSP04118 112 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 NEK2P51955 445 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 NAGLUP54802 743 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 WNT3P56703 355 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 EEFSECP57772 596 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 NKX6-1P78426 367 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 EFR3AQ14156 821 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 ERCC6LQ2NKX8 1250 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 BICRALQ6AI39 1079 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 SLC48A1Q6P1K1 146 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 YRDCQ86U90 279 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 CENPLQ8N0S6 344 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 NXF5Q9H1B4 397 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 VPS11Q9H270 941 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 DLL4Q9NR61 685 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 DKKL1Q9UK85 242 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 SLC12A4Q9UP95 1085 aa19.17■□□□□ 0.66
SQSTM1-210ENST00000506042 PRRC2AP48634 2157 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 UQCRHLA0A096LP55 91 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 STX16-NPEPL1H3BU86 382 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 STX16O14662 325 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 RAD51CO43502 376 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 ICOSLGO75144 302 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 ESRRBO95718 433 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 OTCP00480 354 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 CRHP06850 196 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 INHBBP09529 407 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 FPR1P21462 350 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 DRD5P21918 477 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 IL12BP29460 328 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 PPICP45877 212 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 TRA2BP62995 288 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 FGFBP1Q14512 234 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 MILR1Q7Z6M3 343 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 LUZP2Q86TE4 346 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 MMP21Q8N119 569 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 KLHL29Q96CT2 875 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 ERP27Q96DN0 273 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 UCN2Q96RP3 112 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 SHCBP1LQ9BZQ2 653 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 OR2B2Q9GZK3 357 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 TSPYL1Q9H0U9 437 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 ZNF395Q9H8N7 513 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 BRF2Q9HAW0 419 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 GALNT8Q9NY28 637 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 TAS2R10Q9NYW0 307 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 GRHL1Q9NZI5 618 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 MAPRE3Q9UPY8 281 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 RPH3AQ9Y2J0 694 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 PCDHA9Q9Y5H5 950 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 NF1P21359 2839 aa19.16■□□□□ 0.66
SQSTM1-210ENST00000506042 SRD5A2P31213 254 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 AGFG1P52594 562 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 SRYQ05066 204 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 LTBQ06643 244 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 GGTA1PQ4G0N0 100 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 FNDC7Q5VTL7 733 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 POMZP3Q6PJE2 187 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 PLCZ1Q86YW0 608 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 METTL4Q8N3J2 472 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 PTGR2Q8N8N7 351 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 FBXO25Q8TCJ0 367 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 INTS12Q96CB8 462 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 SFXN2Q96NB2 322 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 COL21A1Q96P44 957 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 SLC39A3Q9BRY0 314 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 MRPL1Q9BYD6 325 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 PLEKHF2Q9H8W4 249 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 SERHLQ9NQF3 203 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 SENP1Q9P0U3 644 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 DLGAP4Q9Y2H0 992 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 FREM3P0C091 2139 aa19.15■□□□□ 0.66
SQSTM1-210ENST00000506042 FRG2CA6NGY1 282 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms