RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 GPR52Q9Y2T5 361 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 NCOR1O75376 2440 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 J3KTA2 159 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 FAAHO00519 579 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 ETHE1O95571 254 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 MT-ND2P03891 347 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 STSP08842 583 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 GP1BBP13224 206 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 CA5AP35218 305 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 CARTPTQ16568 116 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 ODF4Q2M2E3 257 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 KRT74Q7RTS7 529 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 NRMQ8IXM6 262 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 UBE2J2Q8N2K1 259 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 LINC00471Q8N535 108 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 FAR1Q8WVX9 515 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 RSC1A1Q92681 617 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 HTRA1Q92743 480 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 FAM46AQ96IP4 442 aaKnown RBP13.31□□□□□ -0.28
TCOF1-207ENST00000504761 RDH12Q96NR8 316 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 OR4K3Q96R72 315 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 KLHL31Q9H511 634 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF225Q9UK10 706 aa13.31□□□□□ -0.28
TCOF1-207ENST00000504761 CEACAM5P06731 702 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 PSMA3P25788 255 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 MAP4K2Q12851 820 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 FAM86B1Q8N7N1 296 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 OR52A5Q9H2C5 316 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 GORASP2Q9H8Y8 452 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 CENPMQ9NSP4 180 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 DHCR7Q9UBM7 475 aaKnown RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 MED16Q9Y2X0 877 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 CACNA1EQ15878 2313 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 HYKKA2RU49 373 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 SOX1O00570 391 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF182P17025 639 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 DUSP3P51452 185 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 ATP12AP54707 1039 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TPRG1LQ5T0D9 272 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 LNX2Q8N448 690 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 DENND6BQ8NEG7 585 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 HDAC2Q92769 488 aaKnown RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 UFD1Q92890 307 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 CCDC115Q96NT0 180 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 MS4A4EQ96PG1 132 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 SPRTNQ9H040 489 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 MTHFD2LQ9H903 347 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 COMMD3Q9UBI1 195 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 RGPD3A6NKT7 1758 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 C17orf105B2RV13 164 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 J3QLW9 94 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 DENRO43583 198 aaKnown RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 KLK8O60259 260 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TRAPPC6AO75865 159 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF19P17023 458 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 CNR2P34972 360 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 NR0B1P51843 470 aaKnown RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 VBP1P61758 197 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TAB1Q15750 504 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 LHFPL3Q86UP9 236 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TMEM151AQ8N4L1 468 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 RHBDD1Q8TEB9 315 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 CHTF18Q8WVB6 975 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TSEN15Q8WW01 171 aaKnown RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 TREX2Q9BQ50 279 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-207ENST00000504761 G6PC3Q9BUM1 346 aa13.3□□□□□ -0.28
TCOF1-207ENST00000504761 C7orf72A4D263 438 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 AP1G1O43747 822 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 LCMT2O60294 686 aaKnown RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF823P16415 610 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 VLDLRP98155 873 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF846Q147U1 533 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 DCP2Q8IU60 420 aaKnown RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 EID2Q8N6I1 236 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 TM4SF18Q96CE8 201 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 NMNAT1Q9HAN9 279 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 A0A0G2JPF8 293 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 WASHC1A8K0Z3 465 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 HNRNPCL3B7ZW38 293 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 PPM1DO15297 605 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 FOXD2O60548 495 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 HNRNPCL4P0DMR1 293 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 SLC3A1Q07837 685 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 WASH2PQ6VEQ5 465 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 ETFBKMTQ8IXQ9 262 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 AP3S1Q92572 193 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 FCGR1BQ92637 280 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 LRR1Q96L50 414 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 TMED9Q9BVK6 235 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 DCSTAMPQ9H295 470 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 KIR3DX1Q9H7L2 352 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 SEC61A2Q9H9S3 476 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 AHSA1O95433 338 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 SRFP11831 508 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 REEP5Q00765 189 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 PON3Q15166 354 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 NIPAL1Q6NVV3 410 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 TSSK4Q6SA08 328 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 ZNF550Q7Z398 422 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 CDRT4Q8N9R6 151 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms