RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 P2RX2Q9UBL9 471 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TESQ9UGI8 421 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HCN2Q9UL51 889 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYD5 115 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TLX2O43763 284 aaPredicted RBP15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NME6O75414 186 aaPredicted RBP15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 UGT2B17O75795 530 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ADH1CP00326 375 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MSL3P1P0C860 447 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NR4A2P43354 598 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GSTM5P46439 218 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RORCP51449 518 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GAS1P54826 345 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF234Q14588 700 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF79Q15937 498 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 AGAP6Q5VW22 663 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RTL10Q7L3V2 364 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FAM20CQ8IXL6 584 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MORN4Q8NDC4 146 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PSD4Q8NDX1 1056 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MSLNLQ96KJ4 702 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 AMDHD1Q96NU7 426 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 AGAP4Q96P64 663 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ADAM29Q9UKF5 820 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLC35F4A4IF30 521 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR1F1O43749 312 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CYP7B1O75881 506 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 APOA1P02647 267 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PSPHP78330 225 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CSNK1G2P78368 415 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IFITM2Q01629 132 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FUT5Q11128 374 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GINS1Q14691 196 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SYT14P1Q58G82 188 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FAM78AQ5JUQ0 283 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LIPKQ5VXJ0 399 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR4C11Q6IEV9 310 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HMGN2P46Q86SG4 172 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LRRTM4Q86VH4 590 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TRIM69Q86WT6 500 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LAX1Q8IWV1 398 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR8H2Q8N162 312 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR4K5Q8NGD3 323 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SUN5Q8TC36 379 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CXorf40AQ8TE69 158 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CREB3L4Q8TEY5 395 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OTUB1Q96FW1 271 aaPredicted RBP15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 WDFY2Q96P53 400 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KXD1Q9BQD3 176 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DPH7Q9BTV6 452 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TMEM245Q9H330 911 aa15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DIMT1Q9UNQ2 313 aaKnown RBP15.16■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IDH3BO43837 385 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NR2F1P10589 423 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HSD17B2P37059 387 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ETV5P41161 510 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 P2RY2P41231 377 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GIPRP48546 466 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ETV1P50549 477 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CDK5Q00535 292 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 COX10Q12887 443 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 BAK1Q16611 211 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF793Q6ZN11 406 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NRARPQ7Z6K4 114 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SMRP1Q8NCR6 262 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR6T1Q8NGN1 323 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF582Q96NG8 517 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NEDD4LQ96PU5 975 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PCBD2Q9H0N5 130 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NUMA1Q14980 2115 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DOCK9Q9BZ29 2069 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TMEM265A0A087WTH1 108 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IGKV1-8A0A0C4DH67 115 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PLD2O14939 933 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RGS5O15539 181 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PRKRAO75569 313 aaKnown RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 EPHX1P07099 455 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CHRM4P08173 479 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NAT2P11245 290 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PTGER1P34995 402 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RFX2P48378 723 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MAN2A2P49641 1150 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CDK3Q00526 305 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LARS2Q15031 903 aaKnown RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GPR19Q15760 415 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ATAT1Q5SQI0 421 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 C1orf94Q6P1W5 598 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TMEM184AQ6ZMB5 413 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IQCHQ86VS3 1027 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KIF18BQ86Y91 864 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 UBQLNLQ8IYU4 475 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SIX5Q8N196 739 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 Q8N9G6 341 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FGF14Q92915 247 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FNDC11Q9BVV2 318 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PITHD1Q9GZP4 211 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SRRQ9GZT4 340 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 UBE2ZQ9H832 354 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 BCL2L10Q9HD36 194 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TRPC4Q9UBN4 977 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms