RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PRPF18Q99633 342 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 WDR83Q9BRX9 315 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 TMEM120AQ9BXJ8 343 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FRMD8P1Q9BZ68 369 aaPredicted RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 HSD3B7Q9H2F3 369 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 CCDC134Q9H6E4 229 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 KCNK9Q9NPC2 374 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.64□□□□□ -1.83
USP54-217ENST00000498213 IMP3Q9NV31 184 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 ETNK2Q9NVF9 386 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 ZNHIT6Q9NWK9 470 aaKnown RBP3.64□□□□□ -1.83
USP54-217ENST00000498213 NENFQ9UMX5 172 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 WDR37Q9Y2I8 494 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 TTLL3Q9Y4R7 772 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 FAM169AQ9Y6X4 670 aa3.64□□□□□ -1.83
USP54-217ENST00000498213 LOC102723996A0A087X1L8 192 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 LRRD1A4D1F6 860 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 A6NNC1 897 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 H3BMM5 538 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 APOC4-APOC2K7ER74 178 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 KCNK1O00180 336 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 MAP2K7O14733 419 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PIP5K1BO14986 540 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 KLK8O60259 260 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 SMPD2O60906 423 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 CCNDBP1O95273 360 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 LCA5LO95447 670 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 APOC2P02655 101 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TPM1P09493 284 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ALDOCP09972 364 aaKnown RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 ABOP16442 354 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 CXCR2P25025 360 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ATP5DP30049 168 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 GABRA4P48169 554 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TNFSF10P50591 281 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ADARP55265 1226 aaKnown RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 ARG2P78540 354 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 GBE1Q04446 702 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PMPCAQ10713 525 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ILF2Q12905 390 aaKnown RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 NFE2L1Q14494 772 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ARHGAP19Q14CB8 494 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 MPEG1Q2M385 716 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ZNF658BQ4V348 819 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 ALG10Q5BKT4 473 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ALG10BQ5I7T1 473 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 FNBP1LQ5T0N5 605 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ATG9BQ674R7 924 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 KDELC1Q6UW63 502 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 SUSD1Q6UWL2 747 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ARSKQ6UWY0 536 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 C4orf22Q6V702 233 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 Q6ZPB1 254 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 PHLDB2Q86SQ0 1253 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TRABD2AQ86V40 505 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PAQR7Q86WK9 346 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 CDKL3Q8IVW4 592 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 DCUN1D3Q8IWE4 304 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 KATNAL2Q8IYT4 538 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ADGRF3Q8IZF5 1079 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 FBXL14Q8N1E6 418 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 DNAJC22Q8N4W6 341 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TTC29Q8NA56 475 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 OR4E2Q8NGC2 313 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 OR52E1Q8NGJ3 308 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 OR1L3Q8NH93 324 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 CCDC110Q8TBZ0 833 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 STYXQ8WUJ0 223 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ASZ1Q8WWH4 475 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TFGQ92734 400 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 RAD51AP1Q96B01 352 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PERPQ96FX8 193 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ALS2CR12Q96Q35 445 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PANX3Q96QZ0 392 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ZNF347Q96SE7 839 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 EBNA1BP2Q99848 306 aaKnown RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 THAP2Q9H0W7 228 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 GBA3Q9H227 469 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 OR52A5Q9H2C5 316 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ASB8Q9H765 288 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 COG4Q9H9E3 785 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 MKKSQ9NPJ1 570 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 EURLQ9NYK6 297 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TAS2R14Q9NYV8 317 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 SPATA7Q9P0W8 599 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ZNF282Q9UDV7 671 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 C19orf25Q9UFG5 118 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 CRLS1Q9UJA2 301 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 RAB21Q9UL25 225 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 RNF6Q9Y252 685 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 DNAJC16Q9Y2G8 782 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 ZNF835Q9Y2P0 537 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PTRH2Q9Y3E5 179 aaKnown RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 PCDHGB3Q9Y5G1 929 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 PCYT1BQ9Y5K3 369 aaPredicted RBP3.63□□□□□ -1.83
USP54-217ENST00000498213 ARID1AO14497 2285 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 TRRAPQ9Y4A5 3859 aa3.63□□□□□ -1.83
USP54-217ENST00000498213 A0A0U1RQJ8 604 aa3.62□□□□□ -1.83
USP54-217ENST00000498213 RPS10-NUDT3A0A1W2PQS6 291 aa3.62□□□□□ -1.83
USP54-217ENST00000498213 ASPDHA6ND91 283 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms