RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 PCP11498 1178 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 KRT3P12035 628 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 CYP3A5P20815 502 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 CTNNA2P26232 953 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 PIK3R1P27986 724 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 GNA11P29992 359 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 YWHABP31946 246 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 TCF7P36402 384 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 LONP1P36776 959 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 FEN1P39748 380 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 MTIF2P46199 727 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 GCLMP48507 274 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 MARCKSL1P49006 195 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 NLRP11P59045 1033 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 FKBP3Q00688 224 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 MAP2K1Q02750 393 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 UBXN1Q04323 297 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 GFPT1Q06210 699 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 CD300CQ08708 224 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 FCHO2Q0JRZ9 810 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 PPIL2Q13356 520 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 PPP2R5CQ13362 524 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 UPP1Q16831 310 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 TAF3Q5VWG9 929 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 CENPPQ6IPU0 288 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 ZNF774Q6NX45 483 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 SYT10Q6XYQ8 523 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 ZNF720Q7Z2F6 126 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 SLC47A2Q86VL8 602 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 MEX3DQ86XN8 651 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 TICAM2Q86XR7 235 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 RNF130Q86XS8 419 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 SPAG16Q8N0X2 631 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 POM121L12Q8N7R1 296 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 CCDC148Q8NFR7 591 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 OR5M9Q8NGP3 310 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 SPPL2AQ8TCT8 520 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 C18orf25Q96B23 403 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 CCDC127Q96BQ5 260 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 BSCL2Q96G97 398 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 ZNF597Q96LX8 424 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 C16orf45Q96MC5 204 aaPredicted RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 ZMAT2Q96NC0 199 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 PSMB7Q99436 277 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 TUBGCP2Q9BSJ2 902 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 RPP25Q9BUL9 199 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 TEKT3Q9BXF9 490 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 GANQ9H2C0 597 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 DPEP2Q9H4A9 486 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 C5orf66Q9H5L9 145 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 GNB4Q9HAV0 340 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 LZTFL1Q9NQ48 299 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 ANO10Q9NW15 660 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 RNF14Q9UBS8 474 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 HMGXB4Q9UGU5 601 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 GINS2Q9Y248 185 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 MRPS18CQ9Y3D5 142 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 SYNRGQ9UMZ2 1314 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 FRMPD3Q5JV73 1810 aa2.31□□□□□ -2.04
RIF1-212ENST00000498041 PDCD11Q14690 1871 aaKnown RBP2.31□□□□□ -2.04
RIF1-212ENST00000498041 ALPK3Q96L96 1907 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 HCFC1P51610 2035 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 A0A087X0T9 212 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 IGKV6D-21A0A0A0MT36 114 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 TRAV34A0A0B4J273 112 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 LRRIQ3A6PVS8 624 aaPredicted RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 TMEM110-MUSTN1A8MSY1 372 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 GOLGA6L19H0YKK7 550 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 PES1O00541 588 aaKnown RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 CXCL11O14625 94 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 INPP4BO15327 924 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 LRCH4O75427 683 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 SRSF10O75494 262 aaKnown RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 HOXD4P09016 255 aaPredicted RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 FAM228BP0C875 321 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 DLATP10515 647 aaKnown RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 SELEP16581 610 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 IL4RP24394 825 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 RPA1P27694 616 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 CCND2P30279 289 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 SOAT1P35610 550 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 ARL2P36404 184 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 ETV5P41161 510 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 PRPHP41219 470 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 CLCN4P51793 760 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 POLR2FP61218 127 aaKnown RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 BTG1P62324 171 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 IRX3P78415 501 aaPredicted RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 MYL5Q02045 173 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 PRKCEQ02156 737 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 CCDC173Q0VFZ6 552 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 CETN1Q12798 172 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 PDIA5Q14554 519 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 LRRC37A5PQ49AS3 106 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 HIGD2BQ4VC39 106 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 GLRA4Q5JXX5 417 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 CELF3Q5SZQ8 465 aaKnown RBP2.3□□□□□ -2.04
RIF1-212ENST00000498041 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.3□□□□□ -2.04
RIF1-212ENST00000498041 TCEAL6Q6IPX3 200 aa2.3□□□□□ -2.04
RIF1-212ENST00000498041 PET117Q6UWS5 81 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms