RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 PAGE2Q7Z2X7 111 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 WDR53Q7Z5U6 358 aaPredicted RBP8.37□□□□□ -1.07
HDAC3-212ENST00000492407 CMC1Q7Z7K0 106 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 GALNT12Q8IXK2 581 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 PPM1NQ8N819 430 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 FAM13CQ8NE31 585 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 GOT1L1Q8NHS2 421 aaPredicted RBP8.37□□□□□ -1.07
HDAC3-212ENST00000492407 SPPL2AQ8TCT8 520 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 DIO2Q92813 273 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 NXNL1Q96CM4 212 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 RMND5BQ96G75 393 aaPredicted RBP8.37□□□□□ -1.07
HDAC3-212ENST00000492407 ZFP3Q96NJ6 502 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 GAL3ST4Q96RP7 486 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 MTERF1Q99551 399 aaKnown RBP8.37□□□□□ -1.07
HDAC3-212ENST00000492407 SH3GL2Q99962 352 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 ERVK-6Q9BXR3 956 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 RAB17Q9H0T7 212 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 CLEC4MQ9H2X3 399 aaPredicted RBP8.37□□□□□ -1.07
HDAC3-212ENST00000492407 KCNF1Q9H3M0 494 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 IPPKQ9H8X2 491 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 ZNF358Q9NW07 568 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 ERVK-19Q9WJR5 959 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 PRELID1Q9Y255 219 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 MTORP42345 2549 aa8.37□□□□□ -1.07
HDAC3-212ENST00000492407 HCFC1P51610 2035 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PHF3Q92576 2039 aaKnown RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 C15orf38-AP3S2A0A0A6YYH1 394 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 MBD3L4A6NDZ8 208 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 MBD3L3A6NE82 208 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 MBD3L5A6NJ08 208 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 KIF2AO00139 706 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ACOX3O15254 700 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 RAD51CO43502 376 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 TMPRSS11DO60235 418 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 EEDO75530 441 aaKnown RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 AIFM1O95831 613 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ACTL6AO96019 429 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 C2P06681 752 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 RHOXF2BP0C7M4 288 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 EPXP11678 715 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 GFAPP14136 432 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CPN1P15169 458 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CTSSP25774 331 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 GDF1P27539 372 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PIK3R1P27986 724 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 GCKP35557 465 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CASP3P42574 277 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PCYT1AP49585 367 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 DCAF7P61962 342 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 DDX39BQ13838 428 aaKnown RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 GTF2H2Q13888 395 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PFKFB4Q16877 469 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 C6orf163Q5TEZ5 329 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PRAMEF20Q5VT98 475 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 SLC30A6Q6NXT4 461 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 GTF2H2CQ6P1K8 395 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 POMZP3Q6PJE2 187 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 NUP54Q7Z3B4 507 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ZZZ3Q8IYH5 903 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CENPLQ8N0S6 344 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ZNF615Q8N8J6 731 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 OR4K14Q8NGD5 310 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 MBD3L2Q8NHZ7 208 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ZPLD1Q8TCW7 415 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 FBF1Q8TES7 1133 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 EXT2Q93063 718 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 ADIPOR1Q96A54 375 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 RILPQ96NA2 401 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 UCN2Q96RP3 112 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 LRRC1Q9BTT6 524 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 NTMT1Q9BV86 223 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 SORBS1Q9BX66 1292 aaKnown RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 OR10A5Q9H207 317 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 SLC6A15Q9H2J7 730 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 DPH5Q9H2P9 285 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 TMEM165Q9HC07 324 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CCM2LQ9NUG4 571 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-212ENST00000492407 CRIM1Q9NZV1 1036 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 JKAMPQ9P055 326 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 PSME2Q9UL46 239 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 C15orf41Q9Y2V0 281 aa8.36□□□□□ -1.07
HDAC3-212ENST00000492407 STX16-NPEPL1H3BU86 382 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 STX16O14662 325 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 ATP8B1O43520 1251 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 SH3BGRLO75368 114 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 BCAS2O75934 225 aaPredicted RBP8.35□□□□□ -1.07
HDAC3-212ENST00000492407 ATP1B1P05026 303 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 RBP1P09455 135 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 COL6A2P12110 1019 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 CPMP14384 443 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 PORP16435 677 aaPredicted RBP8.35□□□□□ -1.07
HDAC3-212ENST00000492407 KRT15P19012 456 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 BMP5P22003 454 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 UQCRC1P31930 480 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 XKP51811 444 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 PLTPP55058 493 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 BPIFB3P59826 476 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 TRA2BP62995 288 aaKnown RBP8.35□□□□□ -1.07
HDAC3-212ENST00000492407 MAP4K2Q12851 820 aa8.35□□□□□ -1.07
HDAC3-212ENST00000492407 CPSF6Q16630 551 aaKnown RBP eCLIP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms