RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 RHOJQ9H4E5 214 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GSN-AS1Q9NRJ2 163 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 OCIAD1Q9NX40 245 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 AHSPQ9NZD4 102 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SPATA7Q9P0W8 599 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 VPS54Q9P1Q0 977 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 LCMT1Q9UIC8 334 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 PILRAQ9UKJ1 303 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GOLGB1Q14789 3259 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ATXN2Q99700 1313 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 KIF20BQ96Q89 1820 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ANKRD26Q9UPS8 1709 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CCDC162PA2VCL2 907 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GABRR3A8MPY1 467 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SUPT3HB4E1H0 165 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GOLGA8SH3BPF8 625 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 EEF2KO00418 725 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 EIF3HO15372 352 aaKnown RBP eCLIP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ZSCAN12O43309 604 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 BCAS1O75363 584 aaPredicted RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 LGI1O95970 557 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CRYGCP07315 174 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CLTAP09496 248 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CD59P13987 128 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 IRF2P14316 349 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 NAGAP17050 411 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 AMTP48728 403 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 PPT1P50897 306 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 TPMTP51580 245 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ATP5IP56385 69 aaPredicted RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SEC61A1P61619 476 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SULT2A1Q06520 285 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GAGE2BQ13066 116 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CTTNQ14247 550 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 EXOSC7Q15024 291 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ZSWIM7Q19AV6 140 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 TMEM44Q2T9K0 475 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 KIF19Q2TAC6 998 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GAGE2EQ4V326 116 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 XKR3Q5GH77 459 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 FAM76BQ5HYJ3 339 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 LIPNQ5VXI9 398 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 OR4C11Q6IEV9 310 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GAGE2AQ6NT46 116 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 DEGS2Q6QHC5 323 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 NANOGNBQ7Z5D8 188 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GPR141Q7Z602 305 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SLC22A16Q86VW1 577 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 FAM131BQ86XD5 332 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GBGT1Q8N5D6 347 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 LINC00469Q8N7U9 141 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 OR8K3Q8NH51 312 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SLC2A14Q8TDB8 520 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 C19orf60Q96EN9 201 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GUCD1Q96NT3 240 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 PANX2Q96RD6 677 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GFM1Q96RP9 751 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CSF3RQ99062 836 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CHRDL1Q9BU40 450 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 FUNDC2Q9BWH2 189 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 NLNQ9BYT8 704 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ZMYND12Q9H0C1 365 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 CXXC4Q9H2H0 198 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 FBXO44Q9H4M3 255 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SUDS3Q9H7L9 328 aaPredicted RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GEMIN7Q9H840 131 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 A4GALTQ9NPC4 353 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 FAM207AQ9NSI2 230 aaPredicted RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 RNF14Q9UBS8 474 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 GAGE2DQ9UEU5 116 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 ZNF346Q9UL40 294 aaKnown RBP2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 STK38LQ9Y2H1 464 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 MMP24Q9Y5R2 645 aa2.86□□□□□ -1.95
DEPDC1-204ENST00000489862 SALL1Q9NSC2 1324 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 RGPD1P0DJD0 1748 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SHANK3Q9BYB0 1731 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 FLT4P35916 1363 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 PLEKHG2Q9H7P9 1386 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 BLMP54132 1417 aaPredicted RBP2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 TRAV26-1A0A087WT03 109 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 TTC26A0AVF1 554 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 OR6C74A6NCV1 312 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 GLTPD2A6NH11 291 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SRRM3A6NNA2 597 aaPredicted RBP2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 TMEM150CB9EJG8 249 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 PPIAL4DF5H284 164 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SPECC1L-ADORA2AF8WAN1 911 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 H0YL77 283 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 H3BMH7 237 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 MID1O15344 667 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SYT7O43581 403 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SNX3O60493 162 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SDC3O75056 442 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 CDH16O75309 829 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 E2F6O75461 281 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 CLPXO76031 633 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 SOX30O94993 753 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 BMP10O95393 424 aa2.85□□□□□ -1.95
DEPDC1-204ENST00000489862 GNA14O95837 355 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms