RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 FOXA1P55317 472 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 RPP38P78345 283 aaKnown RBP21.08■□□□□ 0.97
COL9A3-213ENST00000489045 MRPS35P82673 323 aaKnown RBP21.08■□□□□ 0.97
COL9A3-213ENST00000489045 C1orf185Q5T7R7 199 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 SH2D5Q6ZV89 423 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 LIX1Q8N485 282 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 EXOSC8Q96B26 276 aaKnown RBP21.08■□□□□ 0.97
COL9A3-213ENST00000489045 LURAP1Q96LR2 239 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 TREX2Q9BQ50 279 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-213ENST00000489045 EBPLQ9BY08 206 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 ALKBH4Q9NXW9 302 aa21.08■□□□□ 0.97
COL9A3-213ENST00000489045 OTOGQ6ZRI0 2925 aa21.08■□□□□ 0.96
COL9A3-213ENST00000489045 CSMD2Q7Z408 3487 aa21.08■□□□□ 0.96
COL9A3-213ENST00000489045 SMIM23A6NLE4 172 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 TOXO94900 526 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 SNX4O95219 450 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 ABCB1P08183 1280 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-213ENST00000489045 SSTR2P30874 369 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 BTKQ06187 659 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 TFF3Q07654 80 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 FNDC7Q5VTL7 733 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 PACS2Q86VP3 889 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 CCDC116Q8IYX3 515 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 C16orf78Q8WTQ4 265 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 LCORQ96JN0 433 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-213ENST00000489045 KCNJ16Q9NPI9 418 aa21.07■□□□□ 0.96
COL9A3-213ENST00000489045 NPDC1Q9NQX5 325 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-213ENST00000489045 NAGAP17050 411 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 EMDP50402 254 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 PLCXD2Q0VAA5 305 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 ZNF628Q5EBL2 1059 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 DESI1Q6ICB0 168 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 FRMD7Q6ZUT3 714 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 ZNF675Q8TD23 568 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 OMA1Q96E52 524 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 HSPBAP1Q96EW2 488 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 C11orf24Q96F05 449 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-213ENST00000489045 UBQLN3Q9H347 655 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 METTL7AQ9H8H3 244 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 PRODH2Q9UF12 536 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 C15orf41Q9Y2V0 281 aa21.06■□□□□ 0.96
COL9A3-213ENST00000489045 C15orf38-AP3S2A0A0A6YYH1 394 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 A0A0G2JNJ9 132 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 SERTM1A2A2V5 107 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 ACOX3O15254 700 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 PLIN3O60664 434 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 TRAPPC6AO75865 159 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 GABRA1P14867 456 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 IGFBP2P18065 325 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 ADH7P40394 386 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 CDK9P50750 372 aaKnown RBP21.05■□□□□ 0.96
COL9A3-213ENST00000489045 NAGLUP54802 743 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 HEPACAMQ14CZ8 416 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 CCDC153Q494R4 210 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 GALNT18Q6P9A2 607 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 TDRPQ86YL5 185 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 OR9A2Q8NGT5 310 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 EPS8L3Q8TE67 593 aaKnown RBP21.05■□□□□ 0.96
COL9A3-213ENST00000489045 KAT2AQ92830 837 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 HGDQ93099 445 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 C14orf79Q96F83 325 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 TMEM41AQ96HV5 264 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 GNRHR2Q96P88 292 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 ANKRA2Q9H9E1 313 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 L2HGDHQ9H9P8 463 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 PPCSQ9HAB8 311 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 EHD3Q9NZN3 535 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 Q9UFV3 132 aa21.05■□□□□ 0.96
COL9A3-213ENST00000489045 ANKRD17O75179 2603 aaKnown RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 GNB5O14775 395 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 HPNP05981 417 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 HOXD4P09016 255 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 ANXA4P09525 319 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 MSX1P28360 303 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 PPICP45877 212 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 ZFP36L2P47974 494 aaKnown RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 CCT5P48643 541 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 DCAF7P61962 342 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 IMPG1Q17R60 797 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 SPDYAQ5MJ70 313 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 NUP54Q7Z3B4 507 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 ULK2Q8IYT8 1036 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 SAMD14Q8IZD0 417 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 CCDC63Q8NA47 563 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 CDC26Q8NHZ8 85 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 NTNG2Q96CW9 530 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 NODALQ96S42 347 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 C12orf65Q9H3J6 166 aaKnown RBP21.04■□□□□ 0.96
COL9A3-213ENST00000489045 SLC35C2Q9NQQ7 365 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 GIMAP4Q9NUV9 329 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 SIRT5Q9NXA8 310 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 GRID1Q9ULK0 1009 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 PCDHGB3Q9Y5G1 929 aa21.04■□□□□ 0.96
COL9A3-213ENST00000489045 FRG2CA6NGY1 282 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 CDH16O75309 829 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 DRD5P21918 477 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 CRHR1P34998 444 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 GSTM5P46439 218 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 DNAJB13P59910 316 aa21.03■□□□□ 0.96
COL9A3-213ENST00000489045 NAA20P61599 178 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms