RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MCUBQ9NWR8 336 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 UCKL1Q9NWZ5 548 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 COMMD9Q9P000 198 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 GMPR2Q9P2T1 348 aaKnown RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 POU2F3Q9UKI9 436 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 LRRC37AA6NMS7 1700 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PLD2O14939 933 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 TRAPPC6AO75865 159 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 RCBTB2O95199 551 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PROS1P07225 676 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 ACVR2AP27037 513 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PSMB5P28074 263 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 MMP12P39900 470 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 MAP2K3P46734 347 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 POU6F2P78424 691 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 GINS1Q14691 196 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PTGES3Q15185 160 aaKnown RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 MLF2Q15773 248 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 DEFB110Q30KQ9 67 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 RNASE12Q5GAN4 147 aaKnown RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 SLC35F1Q5T1Q4 408 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 LCTLQ6UWM7 567 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 FRS2Q8WU20 508 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 RNF31Q96EP0 1072 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 ACTL8Q9H568 366 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 LDAHQ9H6V9 325 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PRSS16Q9NQE7 514 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 GABRR3A8MPY1 467 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 INMT-MINDY4F8WBC2 141 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 BMP4P12644 408 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 MTHFD2P13995 350 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 BMP8BP34820 402 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CXCR4P61073 352 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 KEAP1Q14145 624 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PDSS1Q5T2R2 415 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 KIAA1217Q5T5P2 1943 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PRPF38BQ5VTL8 546 aaKnown RBP10.46□□□□□ -0.74
HDAC6-228ENST00000486227 LIN54Q6MZP7 749 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 BHLHA9Q7RTU4 235 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 BMP8AQ7Z5Y6 402 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 SNX29P2Q8IUI4 249 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PHC2Q8IXK0 858 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 GTF2H4Q92759 462 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 ECHDC3Q96DC8 303 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 SPATA9Q9BWV2 254 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 DEFB126Q9BYW3 111 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 IL21Q9HBE4 155 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 LCKP06239 509 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 RETP07949 1114 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 STOMP27105 288 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CDH11P55287 796 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 TAS2R38P59533 333 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 ACVR1Q04771 509 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CBLBQ13191 982 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PROX2Q3B8N5 592 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 FLYWCH1Q4VC44 716 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 HMBOX1Q6NT76 420 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CADM3Q8N126 398 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 OR2T11Q8NH01 316 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PHF7Q9BWX1 381 aaPredicted RBP10.46□□□□□ -0.74
HDAC6-228ENST00000486227 PTGES2Q9H7Z7 377 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 RDH8Q9NYR8 311 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 AASSQ9UDR5 926 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CD300AQ9UGN4 299 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 LIPT1Q9Y234 373 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 CA5BQ9Y2D0 317 aa10.46□□□□□ -0.74
HDAC6-228ENST00000486227 A0A1B0GTW7 788 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 MITFO75030 526 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 ALPLP05186 524 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 RNH1P13489 461 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 FBLP22087 321 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CD38P28907 300 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 HOXC8P31273 242 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TGFBR2P37173 567 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 HK3P52790 923 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 GRM7Q14831 915 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 OR52E1Q8NGJ3 308 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 OR5M3Q8NGP4 307 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 RBM38Q9H0Z9 239 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TNFRSF10DQ9UBN6 386 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CASP3P42574 277 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 AP3S2P59780 193 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 ADAM15Q13444 863 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TMEM31Q5JXX7 168 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CD300LGQ6UXG3 332 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 NOXA1Q86UR1 476 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 OR7G1Q8NGA0 311 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CHFRQ96EP1 664 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CER1O95813 267 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 STSP08842 583 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 IMPA1P29218 277 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 PTGER1P34995 402 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 FAUP35544 74 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 OMPP47874 163 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 MLLT10P55197 1068 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 CES4AQ5XG92 561 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 SLITRK4Q8IW52 837 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 HS3ST5Q8IZT8 346 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 AKAP1Q92667 903 aaKnown RBP eCLIP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TMEM80Q96HE8 168 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms