RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HORMAD2Q8N7B1 307 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 CATSPER1Q8NEC5 780 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 FBXO27Q8NI29 283 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 GTF2H4Q92759 462 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 RAB3IPQ96QF0 476 aaPredicted RBP15.85■□□□□ 0.13
VIM-205ENST00000485947 MAPKAP1Q9BPZ7 522 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 SLX1AQ9BQ83 275 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.85■□□□□ 0.13
VIM-205ENST00000485947 PRPF19Q9UMS4 504 aaKnown RBP15.85■□□□□ 0.13
VIM-205ENST00000485947 NTNG1Q9Y2I2 539 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 POLEQ07864 2286 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ITPR2Q14571 2701 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 C15orf38-AP3S2A0A0A6YYH1 394 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 IGHV3-20A0A0C4DH32 117 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 PRSS51A0A1B0GVH4 220 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 PRAMEF2O60811 474 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 B4GALT2O60909 372 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 SCN2BO60939 215 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ERN1O75460 977 aaKnown RBP15.84■□□□□ 0.13
VIM-205ENST00000485947 CDC123O75794 336 aaPredicted RBP15.84■□□□□ 0.13
VIM-205ENST00000485947 AIFM1O95831 613 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 CELA2AP08217 269 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 LAMP1P11279 417 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 CPN2P22792 545 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 TRPC1P48995 793 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ALDH9A1P49189 494 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 WNT3P56703 355 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 RAB38P57729 211 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 PHC1P78364 1004 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 DMTNQ08495 405 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 MRPL49Q13405 166 aaKnown RBP15.84■□□□□ 0.13
VIM-205ENST00000485947 EIF2S3LQ2VIR3 472 aaKnown RBP15.84■□□□□ 0.13
VIM-205ENST00000485947 C4orf17Q53FE4 359 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ZNF385BQ569K4 471 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 LRIF1Q5T3J3 769 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 C8orf82Q6P1X6 216 aaPredicted RBP15.84■□□□□ 0.13
VIM-205ENST00000485947 ARPINQ7Z6K5 226 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ZNF595Q8IYB9 648 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 DEFB107AQ8IZN7 70 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ARMC10Q8N2F6 343 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 FAM47BQ8NA70 645 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 PRR7Q8TB68 274 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ELP5Q8TE02 316 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 NUDT8Q8WV74 236 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 MCUR1Q96AQ8 359 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 CCDC115Q96NT0 180 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 OLAHQ9NV23 265 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 KCMF1Q9P0J7 381 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 PSME2Q9UL46 239 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 SLC5A6Q9Y289 635 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 ATG4BQ9Y4P1 393 aa15.84■□□□□ 0.13
VIM-205ENST00000485947 A0A096LPI6 279 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 A0A1W2PR48 441 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 WIPF3A6NGB9 483 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 A8MUI8 341 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 GSC2O15499 205 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 PDPK1O15530 556 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 FRKP42685 505 aaPredicted RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 PSME3P61289 254 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 OLR1P78380 273 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 ZNF324BQ6AW86 544 aaPredicted RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 OR52E8Q6IFG1 317 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 ANKRD26P1Q6NSI1 321 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 SLC48A1Q6P1K1 146 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 SAMD14Q8IZD0 417 aaPredicted RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 TSLPQ969D9 159 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 LRRC58Q96CX6 371 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 GPATCH1Q9BRR8 931 aaKnown RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 UTP23Q9BRU9 249 aaKnown RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 CADM1Q9BY67 442 aaKnown RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 PLA2G3Q9NZ20 509 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 PPIEQ9UNP9 301 aaKnown RBP15.83■□□□□ 0.12
VIM-205ENST00000485947 CACNA1DQ01668 2161 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 DOPEY1Q5JWR5 2465 aa15.83■□□□□ 0.12
VIM-205ENST00000485947 OR2W5A6NFC9 320 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 SAGE2PA6NJ88 616 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 FXYD1O00168 92 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 RFXANKO14593 260 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 RASAL1O95294 804 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 NQO1P15559 274 aaKnown RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 PGM1P36871 562 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.82■□□□□ 0.12
VIM-205ENST00000485947 C6orf10Q5SRN2 563 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 C18orf63Q68DL7 685 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 DLEU7Q6UYE1 221 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 BNC2Q6ZN30 1099 aaPredicted RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 RPS19BP1Q86WX3 136 aaKnown RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 SCUBE1Q8IWY4 988 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 MMP21Q8N119 569 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 KIF2BQ8N4N8 673 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 ZFP28Q8NHY6 868 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 ZBED6CLQ96FA7 236 aaPredicted RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 RBCK1Q9BYM8 510 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 PAIP1Q9H074 479 aaKnown RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 SPAG4Q9NPE6 437 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 SERHLQ9NQF3 203 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 ACSS1Q9NUB1 689 aaPredicted RBP15.82■□□□□ 0.12
VIM-205ENST00000485947 GIMAP4Q9NUV9 329 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 UTS2RQ9UKP6 389 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 CES1P1Q9UKY3 287 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms