RNA–Protein interactions for RNA: ENST00000485024.1

VPS8-223, Transcript of VPS8, CORVET complex subunit, human

TSL 2

Gene VPS8, Length 477 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-223	ENST00000485024	ZNF490	Q9ULM2	529 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	NUDC	Q9Y266	331 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	SMAD5-AS1	Q9Y6J3	95 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ADGRB1	O14514	1584 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ANKRD36B	Q8N2N9	1353 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	TRPM3	Q9HCF6	1732 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	WDFY4	Q6ZS81	3184 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	C15orf61	A6NNL5	157 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024		F8WDY8	70 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024		K7EPI3	171 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ANGPT2	O15123	496 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MLNR	O43193	412 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	BUB1	O43683	1085 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SCGB2A1	O75556	95 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	AKR7A3	O95154	331 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	PDGFB	P01127	241 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	IGLV2-11	P01706	119 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	KRT6B	P04259	564 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	GSTA1	P08263	222 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MBL2	P11226	248 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	EZR	P15311	586 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	GJB2	P29033	226 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	PPP2R1A	P30153	589 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ADSS	P30520	456 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CHRNB4	P30926	498 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	OR1D2	P34982	312 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MDH1	P40925	334 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SOX3	P41225	446 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	KRT6C	P48668	564 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	FHIT	P49789	147 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CCL11	P51671	97 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ERVK-16	P61578	105 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CYCS	P99999	105 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	GABPB1	Q06547	395 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	KLHL30	Q0D2K2	578 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MSLN	Q13421	630 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SHH	Q15465	462 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	TPD52L1	Q16890	204 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MTHFSD	Q2M296	383 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CMPK2	Q5EBM0	449 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SPANXN4	Q5MJ08	99 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	RIPPLY2	Q5TAB7	128 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CDC42EP5	Q6NZY7	148 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ASRGL1	Q7L266	308 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SH2D6	Q7Z4S9	175 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	C5orf24	Q7Z6I8	188 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	YRDC	Q86U90	279 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ICA1L	Q8NDH6	482 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	OR5M9	Q8NGP3	310 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	RDH11	Q8TC12	318 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SMPDL3A	Q92484	453 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	NCLN	Q969V3	563 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ZNF524	Q96C55	264 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	THUMPD2	Q9BTF0	503 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	WRAP53	Q9BUR4	548 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	PINK1	Q9BXM7	581 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	WWP1	Q9H0M0	922 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SIRPD	Q9H106	197 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	FAM124B	Q9H5Z6	455 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	VAT1L	Q9HCJ6	419 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	ZNF71	Q9NQZ8	489 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	GDF3	Q9NR23	364 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	SLC35D1	Q9NTN3	355 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	TEX10	Q9NXF1	929 aa	Predicted RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CLIP2	Q9UDT6	1046 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	MGAT4B	Q9UQ53	548 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	OR1A2	Q9Y585	309 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	3.36	□□□□□ -1.87
VPS8-223	ENST00000485024	CCDC7	Q96M83	1385 aa		3.36	□□□□□ -1.87
VPS8-223	ENST00000485024		A0A087WZY1	265 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024		A0A1B0GU03	582 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	TMCO5B	A8MYB1	307 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024		J3QKU1	62 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	INPP4B	O15327	924 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	CFLAR	O15519	480 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	LRP3	O75074	770 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	CSDE1	O75534	798 aa	Known RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	MFN2	O95140	757 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	NXPH2	O95156	264 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	IGHE	P01854	428 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	RRAS	P10301	218 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	GLRA1	P23415	457 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	TMOD1	P28289	359 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	RFC4	P35249	363 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	MATK	P42679	507 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	LEPR	P48357	1165 aa	Known RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	XG	P55808	180 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	KRTAP12-2	P59991	146 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	SNRPD1	P62314	119 aa	Known RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	SPP2	Q13103	211 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	HNRNPD	Q14103	355 aa	Known RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	BTG3	Q14201	252 aa	Predicted RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	EXOSC7	Q15024	291 aa	Known RBP	3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	HLA-B	Q31612	363 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	FFAR4	Q5NUL3	377 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	LRRC8B	Q6P9F7	803 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	SMIM29	Q86T20	159 aa		3.35	□□□□□ -1.87
VPS8-223	ENST00000485024	CACUL1	Q86Y37	369 aa		3.35	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms