RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SPIBQ01892 262 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 TEKQ02763 1124 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 HHEXQ03014 270 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 SFSWAPQ12872 951 aaKnown RBP13.6□□□□□ -0.23
CHD3-211ENST00000481999 TMEM236Q5W0B7 351 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 TUBA1AQ71U36 451 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 CCDC80Q76M96 950 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 DEPDC4Q8N2C3 294 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 ITFG2Q969R8 447 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 NEURL2Q9BR09 285 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 SLIRPQ9GZT3 109 aaKnown RBP13.6□□□□□ -0.23
CHD3-211ENST00000481999 OR51I1Q9H343 314 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 NEUROD4Q9HD90 331 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 OSGIN1Q9UJX0 560 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 DUSP12Q9UNI6 340 aa13.6□□□□□ -0.23
CHD3-211ENST00000481999 A8MVJ9 347 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 STK25O00506 426 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 KRT75O95678 551 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 CLK1P49759 484 aaKnown RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 UBE2IP63279 158 aaKnown RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 MICAQ29983 383 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ZNF630Q2M218 657 aaPredicted RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 TMEM35AQ53FP2 167 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 PERM1Q5SV97 790 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 DNAJC22Q8N4W6 341 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 GPR32P1Q8NGA4 272 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 OR9Q2Q8NGE9 314 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 KLHDC7BQ96G42 594 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 SARGQ9BW04 601 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 BTBD2Q9BX70 525 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ALOXE3Q9BYJ1 711 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ARMC7Q9H6L4 198 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ADAM29Q9UKF5 820 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 CES1P1Q9UKY3 287 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 TMEM247A6NEH6 219 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 CLCA1A8K7I4 914 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 HMGN2P05204 90 aaKnown RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 ALOX5P09917 674 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 RUNX2Q13950 521 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 LACC1Q8IV20 430 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 LGI4Q8N135 537 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ZBTB8BQ8NAP8 495 aaPredicted RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 OR4D11Q8NGI4 311 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 VANGL1Q8TAA9 524 aaPredicted RBP13.59□□□□□ -0.23
CHD3-211ENST00000481999 RNF31Q96EP0 1072 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 FKBP14Q9NWM8 211 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 ANKMY1Q9P2S6 941 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 PCDHGA2Q9Y5H1 932 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 SEC16AO15027 2179 aa13.59□□□□□ -0.23
CHD3-211ENST00000481999 H0YGG7 62 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 LDB3O75112 727 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 SERPINB7O75635 380 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 CDK1P06493 297 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 LIM2P55344 173 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 ARF3P61204 181 aaPredicted RBP13.58□□□□□ -0.23
CHD3-211ENST00000481999 FUT5Q11128 374 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 KIR2DS3Q14952 304 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 EXOC3L2Q2M3D2 409 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 CRB2Q5IJ48 1285 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 SLC48A1Q6P1K1 146 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 PARGQ86W56 976 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 TMEM52Q8NDY8 209 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 GEMIN6Q8WXD5 167 aaKnown RBP13.58□□□□□ -0.23
CHD3-211ENST00000481999 ZG16BQ96DA0 208 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 ITPKCQ96DU7 683 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 TREX2Q9BQ50 279 aaPredicted RBP13.58□□□□□ -0.23
CHD3-211ENST00000481999 GSDMCQ9BYG8 508 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 ZNF556Q9HAH1 456 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 IL21RQ9HBE5 538 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 CTPS2Q9NRF8 586 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 PILRAQ9UKJ1 303 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 FBXL21Q9UKT6 434 aa13.58□□□□□ -0.23
CHD3-211ENST00000481999 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.58□□□□□ -0.23
CHD3-211ENST00000481999 ZDBF2Q9HCK1 2354 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 M0R129 80 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 PCDH17O14917 1159 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 AIREO43918 545 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 DCNP07585 359 aaKnown RBP13.58□□□□□ -0.24
CHD3-211ENST00000481999 SLC35G6P0C7Q6 338 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 ST6GAL1P15907 406 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 C21orf33P30042 268 aaPredicted RBP13.58□□□□□ -0.24
CHD3-211ENST00000481999 UGT2B10P36537 528 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 LIPAP38571 399 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 IDH2P48735 452 aaKnown RBP13.58□□□□□ -0.24
CHD3-211ENST00000481999 CCR5P51681 352 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 RPS15AP62244 130 aaKnown RBP13.58□□□□□ -0.24
CHD3-211ENST00000481999 SYT16Q17RD7 645 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 TIGD6Q17RP2 521 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 REEP3Q6NUK4 255 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 ZNF605Q86T29 641 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 NLGN4XQ8N0W4 816 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 MCFD2Q8NI22 146 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 ZDHHC1Q8WTX9 485 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 PROX1Q92786 737 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 NIPSNAP1Q9BPW8 284 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 RBCK1Q9BYM8 510 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 DCSTAMPQ9H295 470 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 ENOPH1Q9UHY7 261 aa13.58□□□□□ -0.24
CHD3-211ENST00000481999 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.57□□□□□ -0.24
CHD3-211ENST00000481999 OR2W5A6NFC9 320 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms