RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 C7orf26Q96N11 449 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 TRIM4Q9C037 500 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 GLIPR2Q9H4G4 154 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 LIN28AQ9H9Z2 209 aaKnown RBP14.28□□□□□ -0.12
C9orf3-217ENST00000479161 ATAD3AQ9NVI7 634 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 BAIAP2L1Q9UHR4 511 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 GPR55Q9Y2T6 319 aaPredicted RBP14.28□□□□□ -0.12
C9orf3-217ENST00000479161 NPFFR2Q9Y5X5 522 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 LRRK2Q5S007 2527 aa14.28□□□□□ -0.12
C9orf3-217ENST00000479161 FRG2CA6NGY1 282 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 SCAMP2O15127 329 aaKnown RBP14.27□□□□□ -0.13
C9orf3-217ENST00000479161 PDPK1O15530 556 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 SASH3O75995 380 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 ZIC2O95409 532 aaPredicted RBP14.27□□□□□ -0.13
C9orf3-217ENST00000479161 LBPP18428 481 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 CNR1P21554 472 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 NCBP2P52298 156 aaKnown RBP eCLIP14.27□□□□□ -0.136e-7■■■■■ 27.1
C9orf3-217ENST00000479161 PPP2R2AP63151 447 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 DUSP8Q13202 625 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 LTB4RQ15722 352 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 PDCD2Q16342 344 aaPredicted RBP14.27□□□□□ -0.13
C9orf3-217ENST00000479161 SLC22A10Q63ZE4 541 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 SULF2Q8IWU5 870 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 LIX1Q8N485 282 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 OR52R1Q8NGF1 315 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 CDC26Q8NHZ8 85 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 HOXB13Q92826 284 aaPredicted RBP14.27□□□□□ -0.13
C9orf3-217ENST00000479161 ZBTB9Q96C00 473 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 NTNG2Q96CW9 530 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 ELP4Q96EB1 424 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 MAELQ96JY0 434 aaKnown RBP14.27□□□□□ -0.13
C9orf3-217ENST00000479161 VSTM2LQ96N03 204 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 GAL3ST4Q96RP7 486 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 CLMPQ9H6B4 373 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 KLHL1Q9NR64 748 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 SACM1LQ9NTJ5 587 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 PNPOQ9NVS9 261 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 BCAP29Q9UHQ4 241 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 DNAJC13O75165 2243 aa14.27□□□□□ -0.13
C9orf3-217ENST00000479161 MAST4O15021 2626 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 USP9XQ93008 2570 aaPredicted RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 TP53I11O14683 189 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 ATP8B1O43520 1251 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 PEX1O43933 1283 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 ABCB7O75027 752 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 SOX30O94993 753 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 TGDSO95455 350 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 NR0B1P51843 470 aaKnown RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 RPP38P78345 283 aaKnown RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 MRPS35P82673 323 aaKnown RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 EXOSC7Q15024 291 aaKnown RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 RPS6KA2Q15349 733 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 DPY19L1Q2PZI1 675 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 FAM180BQ6P0A1 224 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 ZCCHC12Q6PEW1 402 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 GK5Q6ZS86 529 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 NUP54Q7Z3B4 507 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 SPATA19Q7Z5L4 167 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 SIAH3Q8IW03 269 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 FBXW8Q8N3Y1 598 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 OR7G2Q8NG99 324 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 OR8J2Q8NGG1 315 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 CEP70Q8NHQ1 597 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 FAM173AQ9BQD7 235 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 HES7Q9BYE0 225 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 NUF2Q9BZD4 464 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 BHLHE41Q9C0J9 482 aaPredicted RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 NXF5Q9H1B4 397 aaKnown RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 SH3BP4Q9P0V3 963 aa14.26□□□□□ -0.13
C9orf3-217ENST00000479161 CHCHD2Q9Y6H1 151 aaPredicted RBP14.26□□□□□ -0.13
C9orf3-217ENST00000479161 ANKUB1A6NFN9 424 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 UPK1AO00322 258 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 SDHDO14521 159 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 P04436 131 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 CT45A8P0DMV1 189 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 CT45A9P0DMV2 189 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 G6PDP11413 515 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 ABCD3P28288 659 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 MAP3K8P41279 467 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 MANFP55145 182 aaKnown RBP14.25□□□□□ -0.13
C9orf3-217ENST00000479161 SRSF11Q05519 484 aaKnown RBP14.25□□□□□ -0.13
C9orf3-217ENST00000479161 SNTA1Q13424 505 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 PTGR1Q14914 329 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 ZNF385BQ569K4 471 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 CT45A2Q5DJT8 189 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 CPTPQ5TA50 214 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 WDR75Q8IWA0 830 aaKnown RBP14.25□□□□□ -0.13
C9orf3-217ENST00000479161 OR2M7Q8NG81 312 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 LRRC8CQ8TDW0 803 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 ACTRT2Q8TDY3 377 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 DOK4Q8TEW6 326 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 STON2Q8WXE9 905 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 KAT2AQ92830 837 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 TESCQ96BS2 214 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 INTS9Q9NV88 658 aaKnown RBP14.25□□□□□ -0.13
C9orf3-217ENST00000479161 DTX4Q9Y2E6 619 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 ZNF407Q9C0G0 2248 aa14.25□□□□□ -0.13
C9orf3-217ENST00000479161 OR6C70A6NIJ9 312 aa14.24□□□□□ -0.13
C9orf3-217ENST00000479161 ZNF195O14628 629 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms