RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 VPS37AQ8NEZ2 397 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 NUP43Q8NFH3 380 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 OR8K3Q8NH51 312 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 FBXO30Q8TB52 745 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ADIPOR1Q96A54 375 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ERP27Q96DN0 273 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 OTUB1Q96FW1 271 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 C16orf58Q96GQ5 468 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 VSTM2LQ96N03 204 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 PANX1Q96RD7 426 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 PAIP1Q9H074 479 aaKnown RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 CDCP1Q9H5V8 836 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 FOLH1BQ9HBA9 442 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 NEUROD4Q9HD90 331 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 EQTNQ9NQ60 294 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ZCCHC3Q9NUD5 404 aaKnown RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 HEMK1Q9Y5R4 338 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 RNF103-CHMP3A0A140T963 221 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 LOC100653049A0A140TA62 436 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 OR6C76A6NM76 312 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 NDUFAB1O14561 156 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 RFXANKO14593 260 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 KRT34O76011 436 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 NADKO95544 446 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-209ENST00000469852 FAM87AP0C7U9 286 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 CASP9P55211 416 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 CORO7P57737 925 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 MLF1P58340 268 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 SPDYE7PQ495Y7 208 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 ACER2Q5QJU3 275 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 TMEM64Q6YI46 380 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 LINC00696Q6ZRV3 163 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 SLC29A4Q7RTT9 530 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 MTERF4Q7Z6M4 381 aaKnown RBP13.69□□□□□ -0.22
COL9A3-209ENST00000469852 RPS19BP1Q86WX3 136 aaKnown RBP13.69□□□□□ -0.22
COL9A3-209ENST00000469852 MSRB3Q8IXL7 192 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 ARMC10Q8N2F6 343 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 CCDC197Q8NCU1 140 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 AURKBQ96GD4 344 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-209ENST00000469852 ITCHQ96J02 903 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 LMF1Q96S06 567 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 YIPF4Q9BSR8 244 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 NXF5Q9H1B4 397 aaKnown RBP13.69□□□□□ -0.22
COL9A3-209ENST00000469852 SERHL2Q9H4I8 314 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 EPS8L2Q9H6S3 715 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 GPATCH2Q9NW75 528 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 MYOTQ9UBF9 498 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 PIEZO2Q9H5I5 2752 aa13.69□□□□□ -0.22
COL9A3-209ENST00000469852 C2orf92A0A1B0GVN3 265 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 CAPN14A8MX76 684 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 SLC22A2O15244 555 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 COQ9O75208 318 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 BCAS2O75934 225 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 OR2J2O76002 312 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 F10P00742 488 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 PRB1P04280 392 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 HMGN2P05204 90 aaKnown RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ACP2P11117 423 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ADSLP30566 484 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 RPS26P62854 115 aaKnown RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF155Q12901 538 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 TP53BP2Q13625 1128 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 CRB2Q5IJ48 1285 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 EXOSC6Q5RKV6 272 aaKnown RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 C6orf10Q5SRN2 563 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF468Q5VIY5 522 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 MFSD12Q6NUT3 480 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 PCSK4Q6UW60 755 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF621Q6ZSS3 439 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 BEST3Q8N1M1 668 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 EXD3Q8N9H8 876 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 NUBPLQ8TB37 319 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 SFXN5Q8TD22 340 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 ABHD17AQ96GS6 310 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 MS4A4EQ96PG1 132 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 UBL7Q96S82 380 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-209ENST00000469852 SLC35A5Q9BS91 424 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 SLC25A23Q9BV35 468 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 RMND5AQ9H871 391 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 C3orf14Q9HBI5 128 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.68□□□□□ -0.225e-9■■■□□ 14.9
COL9A3-209ENST00000469852 SLC25A37Q9NYZ2 338 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 MAP10Q9P2G4 905 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 PCDHGB4Q9UN71 923 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 NDUFAF1Q9Y375 327 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 PCDHB14Q9Y5E9 798 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 EXPH5Q8NEV8 1989 aa13.68□□□□□ -0.22
COL9A3-209ENST00000469852 BOD1L1Q8NFC6 3051 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 A0A096LPI6 279 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 TRBV5-3A0A0A0MS03 114 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 ERN1O75460 977 aaKnown RBP13.67□□□□□ -0.22
COL9A3-209ENST00000469852 ITGA10O75578 1167 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 C1QL1O75973 258 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CT45A8P0DMV1 189 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CT45A9P0DMV2 189 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 COX4I1P13073 169 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 UQCRC2P22695 453 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 MAP3K8P41279 467 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 CD97P48960 835 aa13.67□□□□□ -0.22
COL9A3-209ENST00000469852 TRPC1P48995 793 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms