RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 DUSP2Q05923 314 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 SF3B4Q15427 424 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 NNATQ16517 81 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 NHSL2Q5HYW2 709 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 TCHHL1Q5QJ38 904 aaPredicted RBP15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 FAM219BQ5XKK7 198 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 TIGD3Q6B0B8 471 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 VASNQ6EMK4 673 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 TRMT10CQ7L0Y3 403 aaKnown RBP15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 NUP54Q7Z3B4 507 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM200AQ86VY9 491 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 LACC1Q8IV20 430 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 ADCY4Q8NFM4 1077 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 HGDQ93099 445 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 CNRIP1Q96F85 164 aaPredicted RBP15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM237Q96Q45 408 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 PRDM14Q9GZV8 571 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 METTL7AQ9H8H3 244 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 PRODH2Q9UF12 536 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 MCM8Q9UJA3 840 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 NFU1Q9UMS0 254 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 DVL2O14641 736 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 GNB5O14775 395 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 IMPDH1P20839 514 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 ATP5F1P24539 256 aaPredicted RBP15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 PTPN6P29350 595 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 TIMP3P35625 211 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 PPICP45877 212 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 PLCXD2Q0VAA5 305 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 TOMM20Q15388 145 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 TRMT12Q53H54 448 aaKnown RBP15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 SLC30A6Q6NXT4 461 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 ARSKQ6UWY0 536 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 SPNS3Q6ZMD2 512 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 GPRIN3Q6ZVF9 776 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 RELL2Q8NC24 303 aaPredicted RBP15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 SIMC1Q8NDZ2 872 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 OR52R1Q8NGF1 315 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 OR1J4Q8NGS1 313 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 OMA1Q96E52 524 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 NODALQ96S42 347 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 OSBPL11Q9BXB4 747 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 HEY2Q9UBP5 337 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 UTS2RQ9UKP6 389 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 STK38LQ9Y2H1 464 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 PLLPQ9Y342 182 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 SLC6A5Q9Y345 797 aa15.14■□□□□ 0.01
CCDC28B-204ENST00000469003 KDM4EB2RXH2 506 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 SNPHO15079 494 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 RIPK2O43353 540 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ULK1O75385 1050 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ZWINTO95229 277 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ESRRBO95718 433 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 RHOXF2BP0C7M4 288 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 DRD2P14416 443 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 CHN1P15882 459 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 PCSK2P16519 638 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 BMP7P18075 431 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 DRD5P21918 477 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 HMOX2P30519 316 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 PEX19P40855 299 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 EMDP50402 254 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 PRKAA2P54646 552 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 SNTA1Q13424 505 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 LTB4RQ15722 352 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 EIPR1Q53HC9 387 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 WIPI1Q5MNZ9 446 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 NSUN5P2Q63ZY6 315 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 DESI1Q6ICB0 168 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 FAM180BQ6P0A1 224 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ANGPTL8Q6UXH0 198 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 SLC22A9Q8IVM8 553 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 GBP7Q8N8V2 638 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 NAXEQ8NCW5 288 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 TNIP2Q8NFZ5 429 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 METTL6Q8TCB7 284 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ZNF675Q8TD23 568 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ACMSDQ8TDX5 336 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 L3HYPDHQ96EM0 354 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 UGT2B28Q9BY64 529 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 ACPTQ9BZG2 426 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 PFDN4Q9NQP4 134 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 FETUBQ9UGM5 382 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 CAMK2AQ9UQM7 478 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 DLGAP4Q9Y2H0 992 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 SPG11Q96JI7 2443 aa15.13■□□□□ 0.01
CCDC28B-204ENST00000469003 FRG2CA6NGY1 282 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 KIF2AO00139 706 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 SYT5O00445 386 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 TO15178 435 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 PCDH7O60245 1069 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 DIAPH2O60879 1101 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ICOSLGO75144 302 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 UGT2B11O75310 529 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 BCAS2O75934 225 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 IL2RAP01589 272 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ENO1P06733 434 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 GSTA1P08263 222 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 IL3P08700 152 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 BMP5P22003 454 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms