RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MAPK1P28482 360 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 STT3AP46977 705 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 ALDH6A1Q02252 535 aaKnown RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 MYBPHQ13203 477 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 SMU1Q2TAY7 513 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM71E1Q6IPT2 247 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 C3P1Q6ZMU1 363 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 RGS9BPQ6ZS82 235 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 LRRC34Q8IZ02 419 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 ST13P4Q8IZP2 240 aaPredicted RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 ARMC10Q8N2F6 343 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 FNDC5Q8NAU1 212 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 MDS2Q8NDY4 140 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 NFAM1Q8NET5 270 aaPredicted RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 OR4K14Q8NGD5 310 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 OR14A16Q8NHC5 309 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 LILRB4Q8NHJ6 448 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 CDC26Q8NHZ8 85 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 ASB5Q8WWX0 329 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 DAZLQ92904 295 aaKnown RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 KLHL29Q96CT2 875 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 PPP1R36Q96LQ0 422 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 DGAT2Q96PD7 388 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 NPAS2Q99743 824 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 CDCP1Q9H5V8 836 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 EHD3Q9NZN3 535 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 PSME2Q9UL46 239 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 PPIEQ9UNP9 301 aaKnown RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 CLCA3PQ9Y6N3 262 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 TRPC5OSA6NMA1 111 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 GABRR3A8MPY1 467 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 C17orf105B2RV13 164 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 SDHDO14521 159 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 PRRG2O14669 202 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 ASNA1O43681 348 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 OR10H2O60403 315 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 ERAL1O75616 437 aaKnown RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC35E2P0CK97 266 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 PRPS2P11908 318 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 BCKDHAP12694 445 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 CSNK2A2P19784 350 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 DDCP20711 480 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 GALNSP34059 522 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 OC90Q02509 493 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 C2orf80Q0P641 193 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 MAD2L1Q13257 205 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 OR1C1Q15619 314 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 CAMKMTQ7Z624 323 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 WDR75Q8IWA0 830 aaKnown RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 TMEM178AQ8NBL3 297 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 MORN4Q8NDC4 146 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 B3GNT7Q8NFL0 401 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 PTPMT1Q8WUK0 201 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 CNRIP1Q96F85 164 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 VMP1Q96GC9 406 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 SCMH1Q96GD3 660 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 RBM18Q96H35 190 aaKnown RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 EGLN2Q96KS0 407 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 TSSK3Q96PN8 268 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 SIGLEC12Q96PQ1 595 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 POLDIP3Q9BY77 421 aaKnown RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 DEFB126Q9BYW3 111 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 AKTIPQ9H8T0 292 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 TRIM45Q9H8W5 580 aaPredicted RBP11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 SLCO1B3Q9NPD5 702 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 KCNJ16Q9NPI9 418 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 MIEF1Q9NQG6 463 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 ASIC5Q9NY37 505 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 UTS2RQ9UKP6 389 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 NBEAL1Q6ZS30 2694 aa11.01□□□□□ -0.65
SQSTM1-206ENST00000466342 A0A1W2PS29 197 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 NKX2-6A6NCS4 301 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM171A2A8MVW0 826 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 NPIPA5E9PKD4 350 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNHIT1O43257 154 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 DYRK3O43781 588 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 CTAG2O75638 210 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 TOXO94900 526 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 SP1P08047 785 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 CPMP14384 443 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 PORP16435 677 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 LBPP18428 481 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 TNNI3P19429 210 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 TRHRP34981 398 aaPredicted RBP11□□□□□ -0.65
SQSTM1-206ENST00000466342 ASMTP46597 345 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 CLCN2P51788 898 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 GPR143P51810 404 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 XKP51811 444 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 DGKQP52824 942 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 MLF1P58340 268 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ERVK-8P63133 956 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 EMX2Q04743 252 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 SPRED3Q2MJR0 410 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF750Q32MQ0 723 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 IL23RQ5VWK5 629 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 SPINK14Q6IE38 97 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC25A25Q6KCM7 469 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 OGFOD2Q6N063 350 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 DGAT2L6Q6ZPD8 337 aa11□□□□□ -0.65
SQSTM1-206ENST00000466342 LARP4Q71RC2 724 aaKnown RBP eCLIP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms