RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PTGR1Q14914 329 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 C3AR1Q16581 482 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 PRSS53Q2L4Q9 553 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 PRICKLE4Q2TBC4 344 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 SPATA19Q7Z5L4 167 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 ADCY4Q8NFM4 1077 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 OR8K3Q8NH51 312 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF764Q96H86 408 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-205ENST00000465238 PRPF18Q99633 342 aaKnown RBP16.39■□□□□ 0.21
COL7A1-205ENST00000465238 MAPRE3Q9UPY8 281 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 DCHS2Q6V1P9 2916 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 TACC2O95359 2948 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 NPIPA5E9PKD4 350 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 FCHO1O14526 889 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 DIAPH2O60879 1101 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 SLC25A12O75746 678 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 TGDSO95455 350 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 CT62P0C5K7 136 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 ESRRAP11474 423 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 AGAP20933 346 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 PRPS1L1P21108 318 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 HTR1EP28566 365 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 GRNP28799 593 aaKnown RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 PTGER1P34995 402 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 CYB561P49447 251 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 NCBP2P52298 156 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 SMSP52788 366 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 DIO3P55073 304 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 MLF1P58340 268 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 FUT7Q11130 342 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 PDE7AQ13946 482 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 LTB4RQ15722 352 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 CEBPEQ15744 281 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 MAPKAPK3Q16644 382 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF630Q2M218 657 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 SLC9B1Q4ZJI4 515 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 OGFOD2Q6N063 350 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 ANKRD26P1Q6NSI1 321 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 FAM111BQ6SJ93 734 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 Q6ZPB1 254 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 SLC29A4Q7RTT9 530 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 SPPL2CQ8IUH8 684 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 VWA5B2Q8N398 1253 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 OR7G1Q8NGA0 311 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 ACTRT2Q8TDY3 377 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 TSPAN10Q9H1Z9 355 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 TRIM45Q9H8W5 580 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-205ENST00000465238 MAT2BQ9NZL9 334 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 BCAP29Q9UHQ4 241 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 ATP6V1HQ9UI12 483 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 TINAGQ9UJW2 476 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 NPIPA1Q9UND3 350 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 FBN2P35556 2912 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 OTOGQ6ZRI0 2925 aa16.38■□□□□ 0.21
COL7A1-205ENST00000465238 OR6C76A6NM76 312 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF195O14628 629 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 SCAMP2O15127 329 aaKnown RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 PDPK1O15530 556 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ASNA1O43681 348 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 PRKNO60260 465 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 NME2P1O60361 137 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 PCSK2P16519 638 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 NME2P22392 152 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 SSTR4P31391 388 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 TRHRP34981 398 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 PTGER4P35408 488 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 CLDN8P56748 225 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 SLC37A1P57057 533 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 MGAT2Q10469 447 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 CPTPQ5TA50 214 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF468Q5VIY5 522 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 HLA-DQA1Q5Y7H0 255 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 EPGNQ6UW88 154 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ACAD11Q709F0 780 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 MAVSQ7Z434 540 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 SIAH3Q8IW03 269 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ARMC10Q8N2F6 343 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 OR9A2Q8NGT5 310 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 CEP70Q8NHQ1 597 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ZFP28Q8NHY6 868 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF675Q8TD23 568 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 TMEM125Q96AQ2 219 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 MAELQ96JY0 434 aaKnown RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 DPY30Q9C005 99 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 OR10A5Q9H207 317 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 LIN28AQ9H9Z2 209 aaKnown RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ATAD3AQ9NVI7 634 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 YARS2Q9Y2Z4 477 aaKnown RBP16.37■□□□□ 0.21
COL7A1-205ENST00000465238 CACNA1CQ13936 2221 aa16.37■□□□□ 0.21
COL7A1-205ENST00000465238 ITGA10O75578 1167 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 BCAS2O75934 225 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF24P17028 368 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 HLCSP50747 726 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 MRPS35P82673 323 aaKnown RBP16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ADORA2A-AS1P86434 159 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 RPS6KA2Q15349 733 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 TRMT12Q53H54 448 aaKnown RBP16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF385BQ569K4 471 aa16.36■□□□□ 0.21
COL7A1-205ENST00000465238 ZNF628Q5EBL2 1059 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms