RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZC3H12DA2A288 527 aaKnown RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GATBO75879 557 aaKnown RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 HPXP02790 462 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 PBLDP30039 288 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CAMK2DQ13557 499 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 TPBGQ13641 420 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 KCNC3Q14003 757 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF772Q68DY9 489 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CRTC1Q6UUV9 634 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 FAM92BQ6ZTR7 304 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF467Q7Z7K2 595 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SYT9Q86SS6 491 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GPAT4Q86UL3 456 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 IZUMO1Q8IYV9 350 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 STPG2Q8N412 459 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OXR1Q8N573 874 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF527Q8NB42 609 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GTF3C2Q8WUA4 911 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SPRYD4Q8WW59 207 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GCDHQ92947 438 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 NRTNQ99748 197 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 RANBP3Q9H6Z4 567 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ISG20L2Q9H9L3 353 aaKnown RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 KCNK12Q9HB15 430 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OR6C2Q9NZP2 312 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CNIH4Q9P003 139 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ENOPH1Q9UHY7 261 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 KCND3Q9UK17 655 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CACNG2Q9Y698 323 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 HNRNPCL2B2RXH8 293 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 FRS3O43559 492 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OAZ2O95190 189 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SLC16A8O95907 504 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 DHFRP00374 187 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 IL3P08700 152 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 HK1P19367 917 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 KELP23276 732 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SHC1P29353 583 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 AGTRAPQ6RW13 159 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OR4K5Q8NGD3 323 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OR52H1Q8NGJ2 320 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SCMH1Q96GD3 660 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 MED18Q9BUE0 208 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 METTL17Q9H7H0 456 aaPredicted RBP11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZDHHC3Q9NYG2 299 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CLEC4EQ9ULY5 219 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 HTTP42858 3142 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 NUMA1Q14980 2115 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 CCL15-CCL14A0A0B4J2E2 113 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 A0A1W2PPK0 400 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 A8MVJ9 347 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ANHXE9PGG2 379 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 RTCAO00442 366 aaKnown RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SGTAO43765 313 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 TCRBP04435 133 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 FURINP09958 794 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 TBXA2RP21731 343 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ASMTP46597 345 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 MTNR1AP48039 350 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 DGKGP49619 791 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 GATMP50440 423 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ARHGDIBP52566 201 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 RAB14P61106 215 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SIM1P81133 766 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 HSPB3Q12988 150 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 OCLNQ16625 522 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 CCL15Q16663 113 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF630Q2M218 657 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 CLLU1Q5K131 121 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SFRP5Q5T4F7 317 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 VASNQ6EMK4 673 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 PRSS55Q6UWB4 352 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 DBF4BQ8NFT6 615 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 OR8D4Q8NGM9 314 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SMAP2Q8WU79 429 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 APOBEC4Q8WW27 367 aaKnown RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 GIMAP1Q8WWP7 306 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 COQ10AQ96MF6 247 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SECISBP2Q96T21 854 aaKnown RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 DDOQ99489 341 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ARHGAP9Q9BRR9 750 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SLC6A16Q9GZN6 736 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 PPA2Q9H2U2 334 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 LIN7BQ9HAP6 207 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 HCN3Q9P1Z3 774 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SRRDQ9UH36 339 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 MGAT4BQ9UQ53 548 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 TMEM5Q9Y2B1 443 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 KCNMB2Q9Y691 235 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SIRT4Q9Y6E7 314 aaPredicted RBP11.05□□□□□ -0.64
CPSF3-202ENST00000460593 FAM183AA6NL82 134 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 GPR171O14626 319 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ADAM12O43184 909 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 KLHL18O94889 574 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 SLC2A10O95528 541 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 IFNA7P01567 189 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ANKRD34CP0C6C1 535 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 ZP1P60852 638 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 RIN1Q13671 783 aa11.05□□□□□ -0.64
CPSF3-202ENST00000460593 COL28A1Q2UY09 1125 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms