RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 K7EQM0 130 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 M0R296 226 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PRKYO43930 277 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 HCN1O60741 890 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 TRIM13O60858 407 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SRP72O76094 671 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CYBBP04839 570 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NBEAP1P0C6P0 100 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 HSPD1P10809 573 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PPP3CBP16298 524 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CDH2P19022 906 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MAS1LP35410 378 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CYLC1P35663 651 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MAP2K4P45985 399 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CCR6P51684 374 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NCKAP1LP55160 1127 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 IL9RQ01113 521 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 BDH1Q02338 343 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MTAPQ13126 283 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SLAMF1Q13291 335 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 BTN1A1Q13410 526 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 DNASE1L3Q13609 305 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PTGR1Q14914 329 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MTX3Q5HYI7 312 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF667Q5HYK9 610 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GPR157Q5UAW9 335 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CARD17Q5XLA6 110 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ARL6IP4Q66PJ3 421 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NCR3LG1Q68D85 454 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 KRT80Q6KB66 452 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EMBQ6PCB8 327 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF410Q86VK4 478 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF280BQ86YH2 543 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PLXDC1Q8IUK5 500 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM126BQ8IXS8 530 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 LGI2Q8N0V4 545 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 WDSUB1Q8N9V3 476 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 TBC1D15Q8TC07 691 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF607Q96SK3 696 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 HBEGFQ99075 208 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CDX2Q99626 313 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM110AQ9BQ89 295 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM47Q9BQJ4 181 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ALKBH7Q9BT30 221 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 YTHDF1Q9BYJ9 559 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 WDR11Q9BZH6 1224 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC90BQ9GZT6 254 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ENKD1Q9H0I2 346 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 RAB1BQ9H0U4 201 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 P2RY12Q9H244 342 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 IL25Q9H293 177 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GEMIN7Q9H840 131 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF556Q9HAH1 456 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 B3GNT2Q9NY97 397 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PLK2Q9NYY3 685 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NLGN3Q9NZ94 848 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ARPP21Q9UBL0 812 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EPHA6Q9UF33 1036 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 OPN4Q9UHM6 478 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 FBXW2Q9UKT8 454 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZDHHC8Q9ULC8 765 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 KCNJ14Q9UNX9 436 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PLEKHM1Q9Y4G2 1056 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PHIPQ8WWQ0 1821 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MYH1P12882 1939 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EYSQ5T1H1 3165 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EMSYQ7Z589 1322 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0A6YYC8 382 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A1B0GW15 77 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ELOVL7A1L3X0 281 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CLEC18AA5D8T8 446 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ANKRD61A6NGH8 418 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 C4orf47A7E2U8 309 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 I3L1I5 382 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PDHXO00330 501 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CTDSP2O14595 271 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PRMT5O14744 637 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZBTB5O15062 677 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF264O43296 627 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CHP2O43745 196 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PDE9AO76083 593 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NADKO95544 446 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GOT2P00505 430 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PPBPP02775 128 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ACSM4P0C7M7 580 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CTSAP10619 480 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MUC1P15941 1255 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 EFNA1P20827 205 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 ATP6V1B2P21281 511 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A4P22310 534 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CYP2F1P24903 491 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 IL12BP29460 328 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 CEACAM3P40198 252 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MAGEA2P43356 314 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MAGEA6P43360 314 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PXNP49023 591 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 NDST1P52848 882 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SNAP25P60880 206 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 BLOC1S1P78537 153 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SP2Q02086 613 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms