RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RNASE6Q93091 150 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 ABTB1Q969K4 478 aaPredicted RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 ADIPOR1Q96A54 375 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CCDC126Q96EE4 140 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 GNRHR2Q96P88 292 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CDK15Q96Q40 435 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 PAFAH2Q99487 392 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 TM9SF2Q99805 663 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 FOXC2Q99958 501 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 POLDIP3Q9BY77 421 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 MRPL1Q9BYD6 325 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 BRINP2Q9C0B6 783 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 PRDM14Q9GZV8 571 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 STMN4Q9H169 189 aaPredicted RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 PROK2Q9HC23 129 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 GIMAP4Q9NUV9 329 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 TEX10Q9NXF1 929 aaPredicted RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 DNAJB12Q9NXW2 375 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 NINJ2Q9NZG7 142 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 SPRR3Q9UBC9 169 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 XPR1Q9UBH6 696 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 EXO1Q9UQ84 846 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 C15orf41Q9Y2V0 281 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 WBP11Q9Y2W2 641 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 MRPS18CQ9Y3D5 142 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 L3MBTL1Q9Y468 752 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 LIPGQ9Y5X9 500 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS41-208ENST00000448833 AKAP9Q99996 3911 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 F8P00451 2351 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 EXOC1LA0A1B0GW35 172 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 LRRC14BA6NHZ5 514 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 OR6C70A6NIJ9 312 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 LRRC3CA6NJW4 275 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 KIF2AO00139 706 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 TO15178 435 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ERN1O75460 977 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 PRKRAO75569 313 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 SUPT7LO94864 414 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 SLITRK5O94991 958 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ESRRBO95718 433 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 PDYNP01213 254 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 GBAP04062 536 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CLPSP04118 112 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ENO1P06733 434 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 ABCB1P08183 1280 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 GSTA1P08263 222 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CTAGE8P0CG41 777 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 IMPDH1P20839 514 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ENDOUP21128 410 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 BMP5P22003 454 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 GPX3P22352 226 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CHMP24386 653 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 DNASE1P24855 282 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CTSSP25774 331 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 DNAJA1P31689 397 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 GMPRP36959 345 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 HSD17B3P37058 310 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ADH7P40394 386 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TRPC1P48995 793 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CLK3P49761 638 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 ART1P52961 327 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 PKNOX1P55347 436 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 KRTAP10-9P60411 292 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 SORDQ00796 357 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CLCQ05315 142 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CRYZQ08257 329 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 PLCXD2Q0VAA5 305 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TRAF3Q13114 568 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 GAB1Q13480 694 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 EFR3AQ14156 821 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 DAZAP2Q15038 168 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 ERCC6LQ2NKX8 1250 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 PRICKLE4Q2TBC4 344 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ACSF3Q4G176 576 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 FLYWCH1Q4VC44 716 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 SPIN4Q56A73 249 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 SGO1Q5FBB7 561 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TEX35Q5T0J7 233 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 FBXW10Q5XX13 1052 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TIFABQ6ZNK6 161 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TRMT10CQ7L0Y3 403 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 CHMP1BQ7LBR1 199 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CTAGE4Q8IX94 777 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 PLD6Q8N2A8 252 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 ACMSDQ8TDX5 336 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ZNF483Q8TF39 744 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 UCN3Q969E3 161 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CTHRC1Q96CG8 243 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 KLHL29Q96CT2 875 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 NTNG2Q96CW9 530 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 RMND5BQ96G75 393 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 IQCGQ9H095 443 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 SLC6A15Q9H2J7 730 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CLEC4MQ9H2X3 399 aaPredicted RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 UBQLN3Q9H347 655 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CDC42EP4Q9H3Q1 356 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 ZBTB26Q9HCK0 441 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 SDHAF3Q9NRP4 125 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 TAS2R9Q9NYW1 312 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms