RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CCL24O00175 119 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC28A1O00337 649 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 MAPK13O15264 365 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 EIF3HO15372 352 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS29-202ENST00000447578 LMX1BO60663 402 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 DIRAS3O95661 229 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 KRT14P02533 472 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 FGGP02679 453 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CHRNGP07510 517 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 DAOP14920 347 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CYP11B1P15538 503 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 MSH3P20585 1137 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CA4P22748 312 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 LHCGRP22888 699 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 RPS12P25398 132 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 DNAJB1P25685 340 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ALDH4A1P30038 563 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CHRNA7P36544 502 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 MAGEA4P43358 317 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 NSFP46459 744 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC6A12P48065 614 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 B3GALT5-AS1P59052 145 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 DR1Q01658 176 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC3A1Q07837 685 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ARL16Q0P5N6 197 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CUL1Q13616 776 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SNRNP35Q16560 246 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 WSCD2Q2TBF2 565 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 FASTKD1Q53R41 847 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 PDSS1Q5T2R2 415 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SEL1L2Q5TEA6 688 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 PRAMEF7Q5VXH5 474 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SNRNP48Q6IEG0 339 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 IRGCQ6NXR0 463 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CD164L2Q6UWJ8 174 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 KCTD8Q6ZWB6 473 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ANO5Q75V66 913 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC47A2Q86VL8 602 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 STHQ8IWL8 128 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CD302Q8IX05 232 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 IQCKQ8N0W5 287 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 GPD1LQ8N335 351 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 MREGQ8N565 214 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 KLHDC1Q8N7A1 406 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 UBL4BQ8N7F7 174 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 EIF1ADQ8N9N8 165 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 SIDT2Q8NBJ9 832 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 POC1AQ8NBT0 407 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 TMEM161BQ8NDZ6 487 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC24A4Q8NFF2 622 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 OR52N5Q8NH56 324 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SAP25Q8TEE9 199 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ZNF473Q8WTR7 871 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 WBP2Q969T9 261 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 LRRC45Q96CN5 670 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ALG14Q96F25 216 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 RBM41Q96IZ5 413 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 PCDHB18PQ96TA0 734 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 TRIM51Q9BSJ1 452 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CAPS2Q9BXY5 557 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 POLR3FQ9H1D9 316 aaPredicted RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 NEUROG2Q9H2A3 272 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 CENPHQ9H3R5 247 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 TMBIM4Q9HC24 238 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ACP6Q9NPH0 428 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 FAM114A2Q9NRY5 505 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC35D1Q9NTN3 355 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ANKMY1Q9P2S6 941 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 UTP11Q9Y3A2 253 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 RRP15Q9Y3B9 282 aaKnown RBP3.71□□□□□ -1.82
VPS29-202ENST00000447578 ALG6Q9Y672 507 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 R4GN57 208 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 MYH7BA7E2Y1 1941 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 TNS1Q9HBL0 1735 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 SAA2-SAA4A0A096LPE2 208 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 MIF4GDA9UHW6 222 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 H0YCG3 227 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 H3BMM5 538 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SPOPO43791 374 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SHOX2O60902 331 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 ERLIN2O94905 339 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 STBD1O95210 358 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 CALCAP01258 141 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 NUDT17P0C025 328 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 KRT3P12035 628 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 NCF1P14598 390 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 DARSP14868 501 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 B4GALT1P15291 398 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 CTNNA2P26232 953 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ADSSP30520 456 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 STIP1P31948 543 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 GTF2H1P32780 548 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 OR3A3P47888 321 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 PITPNBP48739 271 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 MARCKSL1P49006 195 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 HMGCS2P54868 508 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 HADHBP55084 474 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 BACE1P56817 501 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 PITX1P78337 314 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 RPP38P78345 283 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms