RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZCCHC12Q6PEW1 402 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 DLEU7Q6UYE1 221 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 APLFQ8IW19 511 aaPredicted RBP14.65□□□□□ -0.06
USP40-206ENST00000443711 CLEC4FQ8N1N0 589 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 KIF2BQ8N4N8 673 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 ZFP90Q8TF47 636 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 LHPPQ9H008 270 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 IL1RL2Q9HB29 575 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 FOLH1BQ9HBA9 442 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 SLAMF8Q9P0V8 285 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 FAF1Q9UNN5 650 aaPredicted RBP14.65□□□□□ -0.06
USP40-206ENST00000443711 KCNMB2Q9Y691 235 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 PTPRQQ9UMZ3 2332 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 C2orf92A0A1B0GVN3 265 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 HMGN2P05204 90 aaKnown RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 KRT16P08779 473 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 HOXB9P17482 250 aaPredicted RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 PPIBP23284 216 aaKnown RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 PPICP45877 212 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 CXADRP78310 365 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 ZNF155Q12901 538 aaPredicted RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 EBPQ15125 230 aaKnown RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 ZNHIT3Q15649 155 aaPredicted RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 GTDC1Q4AE62 458 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 MFSD12Q6NUT3 480 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 H3F3CQ6NXT2 135 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 C9orf40Q8IXQ3 194 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 GALNT16Q8N428 558 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 SLC5A8Q8N695 610 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 CDRT4Q8N9R6 151 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 NUBPLQ8TB37 319 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 SNRNP27Q8WVK2 155 aaKnown RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 APOBEC4Q8WW27 367 aaKnown RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 ROPN1LQ96C74 230 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 LRRC58Q96CX6 371 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 NEURL3Q96EH8 262 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 SLC35G5Q96KT7 338 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 CGREF1Q99674 301 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 ACTRT3Q9BYD9 372 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 WWTR1Q9GZV5 400 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 EPS8L2Q9H6S3 715 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 TPT1P8Q9HAU6 139 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 EQTNQ9NQ60 294 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 GPATCH2Q9NW75 528 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 SLC25A37Q9NYZ2 338 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.64□□□□□ -0.07
USP40-206ENST00000443711 ZMIZ1Q9ULJ6 1067 aa14.64□□□□□ -0.07
USP40-206ENST00000443711 TPRP12270 2363 aaKnown RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 ACACBO00763 2458 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 TRBV5-3A0A0A0MS03 114 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 A8MUI8 341 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 CLIC1O00299 241 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 PRKNO60260 465 aaPredicted RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 SOX30O94993 753 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 CBX6O95503 412 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 DRD5P21918 477 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 MATN1P21941 496 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 MAGEA8P43361 318 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 ANXA11P50995 505 aaKnown RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 CCL11P51671 97 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 LASP1Q14847 261 aaKnown RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 RUNDC3AQ59EK9 446 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 ANGPTL8Q6UXH0 198 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 HACD2Q6Y1H2 254 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 RPS19BP1Q86WX3 136 aaKnown RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 MSRB3Q8IXL7 192 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 BRIX1Q8TDN6 353 aaKnown RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 THAP3Q8WTV1 239 aaPredicted RBP14.63□□□□□ -0.07
USP40-206ENST00000443711 PSMF1Q92530 271 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 ADIPOR1Q96A54 375 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 TP53INP1Q96A56 240 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 GIMAP5Q96F15 307 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 C16orf58Q96GQ5 468 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 VSTM2LQ96N03 204 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 ANKRD27Q96NW4 1050 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 GAL3ST4Q96RP7 486 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 ITPAQ9BY32 194 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 RAD21L1Q9H4I0 556 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 VAPAQ9P0L0 249 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 DTX4Q9Y2E6 619 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 FREM2Q5SZK8 3169 aa14.63□□□□□ -0.07
USP40-206ENST00000443711 A6NL46 340 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 EVPLLA8MZ36 301 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 NME6O75414 186 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 UBOX5O94941 541 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 ALOX5P09917 674 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 CALB2P22676 271 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 CPA2P48052 419 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 NUDT2P50583 147 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 TXNL4AP83876 142 aaKnown RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 GABPB1Q06547 395 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 TCTN3Q6NUS6 607 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 CDC73Q6P1J9 531 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 BORAQ6PGQ7 559 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 C6orf89Q6UWU4 347 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 RNF130Q86XS8 419 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 LGI4Q8N135 537 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 ARMC10Q8N2F6 343 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms