RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GID8Q9NWU2 228 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 PSME2Q9UL46 239 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 EML6Q6ZMW3 1958 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 TRAV17A0A0B4J275 112 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 GLOD5A6NK44 160 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 GABRR3A8MPY1 467 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 IDSB3KWA1 339 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 RNASET2O00584 256 aaKnown RBP11.31□□□□□ -0.6
PTPRF-208ENST00000437607 PROM1O43490 865 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 ERAL1O75616 437 aaKnown RBP11.31□□□□□ -0.6
PTPRF-208ENST00000437607 SERPINA7P05543 415 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 LAMP1P11279 417 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 XCR1P46094 333 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 EMP2P54851 167 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 PCOLCEQ15113 449 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 INAQ16352 499 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 DNAL1Q4LDG9 190 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 MFSD4BQ5TF39 518 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 FAAH2Q6GMR7 532 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 SLC2A7Q6PXP3 512 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 ANKRD46Q86W74 232 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 SHISA5Q8N114 240 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 DNAJB8Q8NHS0 232 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 ROPN1LQ96C74 230 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 ZBED6CLQ96FA7 236 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-208ENST00000437607 CCDC120Q96HB5 630 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 PHF12Q96QT6 1004 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 OR1F2PQ96R84 312 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 BBS4Q96RK4 519 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 EFCAB1Q9HAE3 211 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 NEUROD4Q9HD90 331 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 C14orf105Q9NVL8 296 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 KCMF1Q9P0J7 381 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 TRPC4Q9UBN4 977 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF780BQ9Y6R6 833 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 NF1P21359 2839 aa11.31□□□□□ -0.6
PTPRF-208ENST00000437607 LOC102723996A0A087X1L8 192 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 C15orf38-AP3S2A0A0A6YYH1 394 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 ASPDHA6ND91 283 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 FBP2O00757 339 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 CLDN4O14493 209 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 RFXANKO14593 260 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 KCNH1O95259 989 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 BMP10O95393 424 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 ANP32DO95626 131 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 WDPCPO95876 746 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 FHP07954 510 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 KRT16P08779 473 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 T-ENOLP0DO92 83 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 ITGAMP11215 1152 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 CD1EP15812 388 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 SOAT1P35610 550 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 NCALDP61601 193 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 SYT16Q17RD7 645 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 SPRED3Q2MJR0 410 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 C6orf163Q5TEZ5 329 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 TMEM205Q6UW68 189 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 GFRALQ6UXV0 394 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 ARPINQ7Z6K5 226 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 RETREG3Q86VR2 466 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF595Q8IYB9 648 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 LRRC25Q8N386 305 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 RBM15BQ8NDT2 890 aaKnown RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 OR4A15Q8NGL6 344 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 OR51Q1Q8NH59 317 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 CIDECQ96AQ7 238 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 TBC1D20Q96BZ9 403 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 COQ8BQ96D53 544 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 CCDC115Q96NT0 180 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 PANX1Q96RD7 426 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 TGIF2Q9GZN2 237 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 MKKSQ9NPJ1 570 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 SLC35C2Q9NQQ7 365 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 PCDHGB4Q9UN71 923 aa11.3□□□□□ -0.6
PTPRF-208ENST00000437607 EXO1Q9UQ84 846 aaKnown RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 KLF2Q9Y5W3 355 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-208ENST00000437607 TRGV8A0A0C4DH27 118 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 PRSS51A0A1B0GVH4 220 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 A0A1W2PRB8 838 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 B2RBV5 119 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 CYR61O00622 381 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 GYG2O15488 501 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 CDC123O75794 336 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 C6orf47O95873 294 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 ABCB1P08183 1280 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 CSNK2A2P19784 350 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 EFNA1P20827 205 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 IL10P22301 178 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 GPC1P35052 558 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 NCBP2P52298 156 aaKnown RBP eCLIP11.29□□□□□ -0.62e-6■■□□□ 12.6
PTPRF-208ENST00000437607 PLIN5Q00G26 463 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 PMP22Q01453 160 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 HSPB3Q12988 150 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 SLC13A2Q13183 592 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 PAGE3Q5JUK9 113 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 HACD2Q6Y1H2 254 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 MRGPRGQ86SM5 289 aa11.29□□□□□ -0.6
PTPRF-208ENST00000437607 ZC3H7AQ8IWR0 971 aaKnown RBP11.29□□□□□ -0.6
PTPRF-208ENST00000437607 CLECL1Q8IZS7 167 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms