RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MFSD11O43934 449 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C1QBP02746 253 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 CDH8P55286 799 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C6orf120Q7Z4R8 191 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 FAM46AQ96IP4 442 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 P2RY13Q9BPV8 354 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TNKS2Q9H2K2 1166 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TP53I11O14683 189 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PMS2P2O95744 297 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C1RP00736 705 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RHBDL3P58872 404 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 CREB5Q02930 508 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 NFIXQ14938 502 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SLC39A7Q92504 469 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 KCNC2Q96PR1 638 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SEC61A2Q9H9S3 476 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TMEM131LA2VDJ0 1609 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 OR7A17O14581 309 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PBLDP30039 288 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 NCBP2P52298 156 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS53-204ENST00000437048 PLP2Q04941 152 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SFT2D3Q587I9 215 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ALG1LQ6GMV1 187 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TMEM135Q86UB9 458 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ZNF461Q8TAF7 563 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 THAP4Q8WY91 577 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 NICN1Q9BSH3 213 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PLEKHA3Q9HB20 300 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TAS2R14Q9NYV8 317 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TVP23AA6NH52 213 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ACPPP15309 386 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RFC3P40938 356 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MPEG1Q2M385 716 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ZMAT1Q5H9K5 638 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RNF113BQ8IZP6 322 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 MITD1Q8WV92 249 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 IL12RB2Q99665 862 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SMOC2Q9H3U7 446 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 INTS6Q9UL03 887 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 PRAMEF14Q5SWL7 426 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C19orf43Q9BQ61 176 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 IL17RBQ9NRM6 502 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 DUS2Q9NX74 493 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 OARD1Q9Y530 152 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 J3KR12 359 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 DLX3O60479 287 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PDGFAP04085 211 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 JUNDP17535 347 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RFX2P48378 723 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GIPRP48546 466 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 UBE2MP61081 183 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ASAH1Q13510 395 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 INTS5Q6P9B9 1019 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 DPY19L4Q7Z388 723 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 CEACAM19Q7Z692 300 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C1orf87Q8N0U7 546 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GPR148Q8TDV2 347 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RELTQ969Z4 430 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 OR51V1Q9H2C8 321 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 POLE4Q9NR33 117 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TCRBV3S1A0A5B6 114 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MANBAO00462 879 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SRPX2O60687 465 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ADRB1P08588 477 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GIPP09681 153 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ZNF35P13682 527 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 LCN6P62502 163 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SLC29A4Q7RTT9 530 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SLC5A11Q8WWX8 675 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 LCN9Q8WX39 176 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PRAP1Q96NZ9 151 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 DPCDQ9BVM2 203 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ZNF286AQ9HBT8 521 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SLC2A9Q9NRM0 540 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 C1GALT1Q9NS00 363 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 EXO1Q9UQ84 846 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ENPP4Q9Y6X5 453 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 LRIT2A6NDA9 550 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ECI2O75521 394 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MAGEA11P43364 429 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SOX17Q9H6I2 414 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 PGAP2Q9UHJ9 254 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 BTNL2Q9UIR0 455 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ADRB3P13945 408 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GALP22466 123 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 AQP1P29972 269 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 KRBOX4Q5JUW0 171 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ABLIM2Q6H8Q1 611 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PLPP5Q8NEB5 264 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TMEM185AQ8NFB2 350 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TMEM106CQ9BVX2 250 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MVB12BQ9H7P6 319 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MRPS30Q9NP92 439 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 C1orf123Q9NWV4 160 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 NDOR1Q9UHB4 597 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 WDR45Q9Y484 360 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 KIAA0355O15063 1070 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GAAP10253 952 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 PTPN6P29350 595 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 GHRHRQ02643 423 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms