RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HSPB3Q12988 150 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 DPY19L1Q2PZI1 675 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 PGS1Q32NB8 556 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 FAM174BQ3ZCQ3 159 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 METTL21CQ5VZV1 264 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 TMEM107Q6UX40 140 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 Q6ZS92 163 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 ZGRF1Q86YA3 2104 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 HPS6Q86YV9 775 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 CLECL1Q8IZS7 167 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 MIER2Q8N344 545 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 CPSF7Q8N684 471 aaKnown RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 MDS2Q8NDY4 140 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 CATSPER1Q8NEC5 780 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 OR5L2Q8NGL0 311 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 GOT1L1Q8NHS2 421 aaPredicted RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 TP53INP1Q96A56 240 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 CCDC115Q96NT0 180 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 BTBD9Q96Q07 612 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 RASL10BQ96S79 203 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 CXorf36Q9H7Y0 433 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.49□□□□□ -0.57
USP40-205ENST00000430158 TMEM45AQ9NWC5 275 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 RALYQ9UKM9 306 aaKnown RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 GPR55Q9Y2T6 319 aaPredicted RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 YARS2Q9Y2Z4 477 aaKnown RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 HEMK1Q9Y5R4 338 aaPredicted RBP11.49□□□□□ -0.57
USP40-205ENST00000430158 DNAJC13O75165 2243 aa11.49□□□□□ -0.57
USP40-205ENST00000430158 PCNX3Q9H6A9 2034 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 FREM3P0C091 2139 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 SPENQ96T58 3664 aaKnown RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 ZNF407Q9C0G0 2248 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 FAM234BA2RU67 622 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ASPDHA6ND91 283 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 WWP2O00308 870 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TO15178 435 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 PRAMEF2O60811 474 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ITGA10O75578 1167 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 BCAS2O75934 225 aaPredicted RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 NEURL1O76050 574 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 PGRP06401 933 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 CT45A8P0DMV1 189 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 CT45A9P0DMV2 189 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TROVE2P10155 538 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP40-205ENST00000430158 DDX5P17844 614 aaKnown RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 DRD5P21918 477 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 PTPN6P29350 595 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 S100A3P33764 101 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 PPICP45877 212 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TNFSF10P50591 281 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 HLCSP50747 726 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ARFIP2P53365 341 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 GNGT1P63211 74 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 IRX1P78414 480 aaPredicted RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 TUBA3CQ13748 450 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ZNF791Q3KP31 576 aaPredicted RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 CT45A2Q5DJT8 189 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ABHD17BQ5VST6 288 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 IRAK1BP1Q5VVH5 260 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TUBA3EQ6PEY2 450 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 BLOC1S3Q6QNY0 202 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 NPSR1Q6W5P4 371 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TMEM64Q6YI46 380 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 Q8NA96 180 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 ZFP28Q8NHY6 868 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 NTNG2Q96CW9 530 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 FAM120BQ96EK7 910 aaKnown RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 ITPAQ9BY32 194 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 NXF5Q9H1B4 397 aaKnown RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 EPS8L2Q9H6S3 715 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 FOLH1BQ9HBA9 442 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 SH2D2AQ9NP31 389 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 FAM120CQ9NX05 1096 aaKnown RBP11.48□□□□□ -0.57
USP40-205ENST00000430158 MAP10Q9P2G4 905 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 TEKT2Q9UIF3 430 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 BTNL2Q9UIR0 455 aa11.48□□□□□ -0.57
USP40-205ENST00000430158 C2orf92A0A1B0GVN3 265 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 GMNCA6NCL1 334 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 OR5H15A6NDH6 313 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 C1QL1O75973 258 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 OR6B1O95007 311 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 F10P00742 488 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 C1QCP02747 245 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 IL6P05231 212 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 HOXB9P17482 250 aaPredicted RBP11.47□□□□□ -0.57
USP40-205ENST00000430158 POLR2JP52435 117 aaKnown RBP11.47□□□□□ -0.57
USP40-205ENST00000430158 PSG6Q00889 435 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SF3A3Q12874 501 aaKnown RBP eCLIP11.47□□□□□ -0.575e-6■■■■■ 39.5
USP40-205ENST00000430158 RCAN2Q14206 197 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SQLEQ14534 574 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 RPS6KA2Q15349 733 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 TLR1Q15399 786 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 PLEKHN1Q494U1 663 aaPredicted RBP11.47□□□□□ -0.57
USP40-205ENST00000430158 NADK2Q4G0N4 442 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 ANXA8L1Q5VT79 327 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 MSANTD1Q6ZTZ1 278 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SLC29A4Q7RTT9 530 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 ANKRD46Q86W74 232 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SLC15A4Q8N697 577 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SIGLEC12Q96PQ1 595 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms