RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PIP5K1CO60331 668 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 SLC2A10O95528 541 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 IFNW1P05000 195 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CHRM4P08173 479 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CHMP24386 653 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 HOXD12P35452 270 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CD79BP40259 229 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 KIR2DL1P43626 348 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 PRDX1Q06830 199 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 EIF4HQ15056 248 aaKnown RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 NDUFAF6Q330K2 333 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OR2G6Q5TZ20 316 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TCTN3Q6NUS6 607 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ZNF605Q86T29 641 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 P2RY8Q86VZ1 359 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 DNAJC5GQ8N7S2 189 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 TMEM52Q8NDY8 209 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 FAM46DQ8NEK8 389 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OR52N2Q8NGI0 321 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 OR51L1Q8NGJ5 315 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 UBE2E3Q969T4 207 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 ZHX1-C8orf76Q96EF9 292 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MRGPRX1Q96LB2 322 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CHST8Q9H2A9 424 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MED20Q9H944 212 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 SIRT3Q9NTG7 399 aaPredicted RBP7.89□□□□□ -1.15
CD44-208ENST00000428726 ZNF226Q9NYT6 803 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 CA14Q9ULX7 337 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 PCDHGB3Q9Y5G1 929 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 MAU2Q9Y6X3 613 aa7.89□□□□□ -1.15
CD44-208ENST00000428726 PRSS38A1L453 326 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 SGK494L7N484 410 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 HRKO00198 91 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CACNB4O00305 520 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 VEGFDO43915 354 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PRG2P13727 222 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 DDCP20711 480 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 NTSR1P30989 418 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CTHP32929 405 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PCGF2P35227 344 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 RAB28P51157 221 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 ITGA1P56199 1179 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 VSX2P58304 361 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 GPR18Q14330 331 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 HEPACAMQ14CZ8 416 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 TMEM52BQ4KMG9 183 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 DESI1Q6ICB0 168 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 SDE2Q6IQ49 451 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 SHISA6Q6ZSJ9 500 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 Q6ZSR6 202 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 LHFPL3Q86UP9 236 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 NUDT13Q86X67 352 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 OR2L3Q8NG85 312 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 GOT1L1Q8NHS2 421 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 FAM174AQ8TBP5 190 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PHOSPHO2Q8TCD6 241 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 GRHL3Q8TE85 626 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 NUP210Q8TEM1 1887 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 SETD7Q8WTS6 366 aaKnown RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 CHPT1Q8WUD6 406 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 RGMAQ96B86 450 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 APOL4Q9BPW4 351 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 MENTQ9BUN1 341 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PLA2G12AQ9BZM1 189 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CCDC86Q9H6F5 360 aaKnown RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 ACOT13Q9NPJ3 140 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 NAALAD2Q9Y3Q0 740 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 LRRN3E7EW58 273 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PCMT1P22061 227 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 SSTR4P31391 388 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 GRK3P35626 688 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 LSSP48449 732 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CXCR4P61073 352 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 KCNJ8Q15842 424 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 TSTQ16762 297 aaKnown RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 TIGD6Q17RP2 521 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 NKAIN2Q5VXU1 208 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 ZNF776Q68DI1 518 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 REEP3Q6NUK4 255 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 SLC30A6Q6NXT4 461 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 UNC5DQ6UXZ4 953 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 TMEM64Q6YI46 380 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 MTSS1LQ765P7 747 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 TAF8Q7Z7C8 310 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 AMIGO1Q86WK6 493 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 GALNT12Q8IXK2 581 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 MCFD2Q8NI22 146 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 TRUB1Q8WWH5 349 aaKnown RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 LGALS12Q96DT0 336 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 COX14Q96I36 57 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 FAM46AQ96IP4 442 aaKnown RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 SLC35G5Q96KT7 338 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 BMFQ96LC9 184 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CNPPD1Q9BV87 410 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 PRRG3Q9BZD7 231 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 BTBD1Q9H0C5 482 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 LRRN3Q9H3W5 708 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 GPN2Q9H9Y4 310 aaPredicted RBP7.88□□□□□ -1.15
CD44-208ENST00000428726 ERVK13-1Q9NX77 482 aa7.88□□□□□ -1.15
CD44-208ENST00000428726 CD207Q9UJ71 328 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms