RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 TSC22D1Q15714 1073 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ENTPD8Q5MY95 495 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 PDE12Q6L8Q7 609 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 LIN54Q6MZP7 749 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CFAP77Q6ZQR2 320 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 PTCHD4Q6ZW05 846 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 KANSL1Q7Z3B3 1105 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 TEX19Q8NA77 164 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 OR52N2Q8NGI0 321 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CLHC1Q8NHS4 586 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 RPLP0P6Q8NHW5 317 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 FOXJ1Q92949 421 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 EXT2Q93063 718 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SEC14L3Q9UDX4 400 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 PCDHB7Q9Y5E2 793 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SNRPGP15A8MWD9 76 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ISM1B1AKI9 464 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 GFYI3L273 518 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 RNASET2O00584 256 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 RNGTTO60942 597 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 GASTP01350 101 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 HPXP02790 462 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 VTNP04004 478 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 LGALS2P05162 132 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ATP5A1P25705 553 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 CDKN1CP49918 316 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 GAB1Q13480 694 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CPSF6Q16630 551 aaKnown RBP eCLIP4.86□□□□□ -1.63
RIF1-203ENST00000428287 UBXN11Q5T124 520 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 C10orf91Q5T1B1 145 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 HBMQ6B0K9 141 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 PSAPL1Q6NUJ1 521 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 USP30Q70CQ3 517 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 UBE2R2Q712K3 238 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 KLHDC8AQ8IYD2 350 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 OR6K3Q8NGY3 331 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SMIM4Q8WVI0 70 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 MAL2Q969L2 176 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 C1GALT1C1Q96EU7 318 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ERMAPQ96PL5 475 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 MAGEH1Q9H213 219 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 RNF39Q9H2S5 420 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 MRPL17Q9NRX2 175 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 YARS2Q9Y2Z4 477 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 NUBP2Q9Y5Y2 271 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CSADQ9Y600 493 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SMIM35A0A1B0GVV1 85 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 IRGMA1A4Y4 181 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 MEX3AA1L020 520 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 PRSS44E7EML9 344 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 M0R233 179 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 KPNA3O00505 521 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 SCRN3Q0VDG4 424 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 LRRC32Q14392 662 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ST3GAL2Q16842 350 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ZNF772Q68DY9 489 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 TAPT1Q6NXT6 567 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ZNF621Q6ZSS3 439 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 USP45Q70EL2 814 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 TPRA1Q86W33 373 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SLC30A8Q8IWU4 369 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 HMCESQ96FZ2 354 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ZNF764Q96H86 408 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 DDOQ99489 341 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 TCF25Q9BQ70 676 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 MYOZ2Q9NPC6 264 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SCML2Q9UQR0 700 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 SYNJ2BP-COX16A0A087WUM0 186 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 A0A0G2JK05 382 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 A0A1B0GUH1 482 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 RRN3P2A6NIE6 340 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 GPR32O75388 356 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ACSL1P33121 698 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 ZP1P60852 638 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CXCL9Q07325 125 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 TTLL4Q14679 1199 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CSRP2Q16527 193 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CYP27C1Q4G0S4 372 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 PXKQ7Z7A4 578 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 UBE2J2Q8N2K1 259 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 OR1M1Q8NGA1 313 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 OR4D10Q8NGI6 311 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 CNOT9Q92600 299 aaKnown RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 MTERF3Q96E29 417 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 NELL2Q99435 816 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 MAN2C1Q9NTJ4 1040 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 COX16Q9P0S2 106 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 HCN3Q9P1Z3 774 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 VPS29Q9UBQ0 182 aa4.86□□□□□ -1.63
RIF1-203ENST00000428287 DNMT3AQ9Y6K1 912 aaPredicted RBP4.86□□□□□ -1.63
RIF1-203ENST00000428287 LOC102723532A0A0G2JNH3 316 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 LINC00854A0A1B0GVQ3 168 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 NPEPPSL1A6NEC2 478 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 D6RAR5 112 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 LINC01387J3KSC0 135 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 PLPP2O43688 288 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 GATCO43716 136 aaKnown RBP4.85□□□□□ -1.63
RIF1-203ENST00000428287 SDC3O75056 442 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 AQP8O94778 261 aa4.85□□□□□ -1.63
RIF1-203ENST00000428287 RGS11O94810 467 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms