RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MAP10Q9P2G4 905 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 PRPF19Q9UMS4 504 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 HEMK1Q9Y5R4 338 aaPredicted RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 MRPS18BQ9Y676 258 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 SPEGQ15772 3267 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 TGFBR3LH3BV60 316 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 SOCS6O14544 535 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 TERTO14746 1132 aaKnown RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 HS6ST1O60243 411 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 HMGN2P05204 90 aaKnown RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 PRKAR1AP10644 381 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 COX6A1P12074 109 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 ATP6V1C1P21283 382 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 F8A1P23610 371 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 ITGA3P26006 1051 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 SSTR4P31391 388 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 CDKN2CP42773 168 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 TMED10P49755 219 aaKnown RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 ATP1A4Q13733 1029 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 PCOLCEQ15113 449 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 PRSS53Q2L4Q9 553 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 INTS11Q5TA45 600 aaKnown RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 SAXO2Q658L1 398 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 NANOGP8Q6NSW7 305 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 CDC73Q6P1J9 531 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 RETREG3Q86VR2 466 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 RNF130Q86XS8 419 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 OR52N2Q8NGI0 321 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 ZNF721Q8TF20 911 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 RAB3IPQ96QF0 476 aaPredicted RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 STACQ99469 402 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 NANOGQ9H9S0 305 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 MMP25Q9NPA2 562 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 SLC52A3Q9NQ40 469 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 SIRT3Q9NTG7 399 aaPredicted RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 VAPAQ9P0L0 249 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 NTMQ9P121 344 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 P2RX2Q9UBL9 471 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 LIPT1Q9Y234 373 aa9.4□□□□□ -0.91
CD44-207ENST00000425428 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.4□□□□□ -0.91
CD44-207ENST00000425428 ACACAQ13085 2346 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 A0A1W2PQ72 361 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 A0A1W2PS29 197 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 ASPDHA6ND91 283 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 A8MUI8 341 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 ACOX3O15254 700 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 ASNA1O43681 348 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DNAJC8O75937 253 aaPredicted RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 SERPINA7P05543 415 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 CT62P0C5K7 136 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 NR2F1P10589 423 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 SLC6A2P23975 617 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 EIF2S3P41091 472 aaKnown RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 CASRP41180 1078 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 SLC37A1P57057 533 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 TMPRSS3P57727 454 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 FOXL2P58012 376 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DSTNP60981 165 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 RNF4P78317 190 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 RPP38P78345 283 aaKnown RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 SLC25A3Q00325 362 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DUSP2Q05923 314 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 CDC20Q12834 499 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 IL10RAQ13651 578 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 RGNQ15493 299 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DECR1Q16698 335 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 GCNT6Q5T4J0 391 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 FAM69BQ5VUD6 431 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 UNQ6494/PRO21346Q6UXR6 183 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DLEU7Q6UYE1 221 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 METTL25Q8N6Q8 603 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 RBM15BQ8NDT2 890 aaKnown RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 C16orf52Q8NHV5 167 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 NUBPLQ8TB37 319 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 PNPT1Q8TCS8 783 aaKnown RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 XAGE5Q8WWM1 108 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 HSPBAP1Q96EW2 488 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 LCORQ96JN0 433 aaPredicted RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 CDRT15Q96T59 188 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 KCTD14Q9BQ13 255 aaPredicted RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 G6PC3Q9BUM1 346 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 FOLH1BQ9HBA9 442 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 DUSP22Q9NRW4 184 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 GIN1Q9NXP7 522 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 ZNF639Q9UID6 485 aa9.39□□□□□ -0.91
CD44-207ENST00000425428 PPIEQ9UNP9 301 aaKnown RBP9.39□□□□□ -0.91
CD44-207ENST00000425428 ERICH4A6NGS2 130 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 TLX3O43711 291 aaPredicted RBP9.38□□□□□ -0.91
CD44-207ENST00000425428 CIB2O75838 187 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 DDAH2O95865 285 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 CBX7O95931 251 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 IFNA14P01570 189 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 ALPPP05187 535 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 HPGDP15428 266 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 DRD5P21918 477 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 IL12BP29460 328 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 GABRA3P34903 492 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 PTGER1P34995 402 aa9.38□□□□□ -0.91
CD44-207ENST00000425428 PGM1P36871 562 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms