RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SIRT3Q9NTG7 399 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ZDHHC18Q9NUE0 388 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 TAS2R13Q9NYV9 303 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 OR6C2Q9NZP2 312 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 HCN3Q9P1Z3 774 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 NLKQ9UBE8 527 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 MTRF1LQ9UGC7 380 aaKnown RBP2.36□□□□□ -2.03
VPS13A-208ENST00000423463 SATB2Q9UPW6 733 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 OSGIN2Q9Y236 505 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ASXL3Q9C0F0 2248 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 SPTBN4Q9H254 2564 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 A0A087X0M5 115 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 A0A1B0GX30 115 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 A0A1W2PNU3 283 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM247A6NEH6 219 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TLCD2A6NGC4 264 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAM159BA6NKW6 160 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CDRT15L2A8MXV6 281 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 C2orf74A8MZ97 194 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GFYI3L273 518 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 BTN3A3O00478 584 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CASC3O15234 703 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC16A5O15375 505 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZBTB14O43829 449 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 KIF1CO43896 1103 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF500O60304 480 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PSIP1O75475 530 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 C1orf105O95561 183 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZBTB11O95625 1053 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DDAH2O95865 285 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 HLA-DQA2P01906 255 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CATP04040 527 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TPBGLP0DKB5 382 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FGF3P11487 239 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CCL4P13236 92 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NELFEP18615 380 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 POLR2CP19387 275 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PRDX3P30048 256 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SSTR1P30872 391 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 MTNR1AP48039 350 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RGS4P49798 205 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RAB28P51157 221 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CSE1LP55060 971 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GFERP55789 205 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NANOS2P60321 138 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RPP30P78346 268 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ACY1Q03154 408 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NAB1Q13506 487 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CUL1Q13616 776 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 IL11RAQ14626 422 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 KIR2DS3Q14952 304 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ARHGAP19Q14CB8 494 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TRADDQ15628 312 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ACSBG2Q5FVE4 666 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF766Q5HY98 468 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DNTTIP2Q5QJE6 756 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 UBAP2Q5T6F2 1119 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAM45BPQ6NSW5 357 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 IRGCQ6NXR0 463 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DUS1LQ6P1R4 473 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 INO80CQ6PI98 192 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CEACAM20Q6UY09 585 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TBC1D1Q86TI0 1168 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZC3HC1Q86WB0 502 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 IFT20Q8IY31 132 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DPP10Q8N608 796 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 EIF1ADQ8N9N8 165 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SIDT2Q8NBJ9 832 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NOA1Q8NC60 698 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OR5AR1Q8NGP9 310 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OR2L8Q8NGY9 312 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OR8K5Q8NH50 307 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CFAP61Q8NHU2 1237 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 HMGCLL1Q8TB92 370 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAM45AQ8TCE6 357 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 MCOLN3Q8TDD5 553 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RAB40AQ8WXH6 277 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ANKRD7Q92527 254 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC22A18Q96BI1 424 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ELP4Q96EB1 424 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PDLIM5Q96HC4 596 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 VPS39Q96JC1 886 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GPR21Q99679 349 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 HGH1Q9BTY7 390 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CHRNA10Q9GZZ6 450 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OCIAD1Q9NX40 245 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ALKBH4Q9NXW9 302 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC39A1Q9NY26 324 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 IL1RAPL1Q9NZN1 696 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM9Q9P0T7 183 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SPATA7Q9P0W8 599 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GALPQ9UBC7 116 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PISDQ9UG56 409 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 LNPEPQ9UIQ6 1025 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TRMT6Q9UJA5 497 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 POMT2Q9UKY4 750 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 BTRCQ9Y297 605 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SPTBN2O15020 2390 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SCN8AQ9UQD0 1980 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 A0A087WV48 116 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms