RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FEZF1A0PJY2 475 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 PRAMEF2O60811 474 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 RNF144AP50876 292 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 Q6ZVL8 140 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 SHFQ7M4L6 423 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 OR5AK2Q8NH90 309 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 GPR174Q9BXC1 333 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 ARL6Q9H0F7 186 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 C8orf33Q9H7E9 229 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 RHOP08100 348 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 DEFB134Q4QY38 66 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 MSS51Q4VC12 460 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 GALNT10Q86SR1 603 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 TSPAN33Q86UF1 283 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 TRIM73Q86UV7 250 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 APOBEC3BQ9UH17 382 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 APLNRP35414 380 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 RAB41Q5JT25 222 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 ABHD12BQ7Z5M8 362 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 CMTM1Q8IZ96 169 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 ANKK1Q8NFD2 765 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 HINT2Q9BX68 163 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 LOC102723532A0A0G2JNH3 316 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 CYB5BO43169 146 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 KIAA0513O60268 411 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 CFHP08603 1231 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 OR8U9P0C7N5 309 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 CYCSP99999 105 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 RING1Q06587 406 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 SNTB2Q13425 540 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 PPP1R3AQ16821 1122 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 ACBD7Q8N6N7 88 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 MUS81Q96NY9 551 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 B3GALT1Q9Y5Z6 326 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 PAK4O96013 591 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 RAB4AP20338 218 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 RABIFP47224 123 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TAS2R38P59533 333 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 SRYQ05066 204 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 HACD2Q6Y1H2 254 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 IMP4Q96G21 291 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 SGIP1Q9BQI5 828 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 OR1A2Q9Y585 309 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PROZP22891 400 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TNFSF4P23510 183 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PYCR1P32322 319 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 GPR4P46093 362 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PITPNBP48739 271 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 UPP1Q16831 310 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TECRLQ5HYJ1 363 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TCTE1Q5JU00 501 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF648Q5T619 568 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 KANK2Q63ZY3 851 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PDZD9Q8IXQ8 264 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 OR51T1Q8NGJ9 327 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 SYT17Q9BSW7 474 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 C19orf12Q9NSK7 152 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 IL20RAQ9UHF4 553 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 OTX2P32243 289 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 SPHARQ15513 63 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 RNASE10Q5GAN6 216 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 OR14L1PQ8NHC6 308 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 DIO2Q92813 273 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 OR14A2Q96R54 314 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 A8MXE2 369 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 CDK3Q00526 305 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 KCNAB2Q13303 367 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ELAVL3Q14576 367 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM53Q6P2H8 277 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ASCC1Q8N9N2 400 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 FAM46AQ96IP4 442 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC45A3Q96JT2 553 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 KLHL9Q9P2J3 617 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 MYH2Q9UKX2 1941 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 FMN2Q9NZ56 1722 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ARGFXA6NJG6 315 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 A8MVJ9 347 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 GOSR2O14653 212 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 JRKO75564 520 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 KRBOX4Q5JUW0 171 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF695Q8IW36 515 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 MS4A15Q8N5U1 240 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 IGSF21Q96ID5 467 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 CCDC106Q9BWC9 280 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 CCM2LQ9NUG4 571 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 HMX3A6NHT5 357 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 RAB3BP20337 219 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TAS2R20P59543 309 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PRPS1P60891 318 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 PTPRCAPQ14761 206 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 LANCL3Q6ZV70 420 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 CPNE8Q86YQ8 564 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 DPH7Q9BTV6 452 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 TP63Q9H3D4 680 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 ST14Q9Y5Y6 855 aa12.19□□□□□ -0.46
CCDC88C-204ENST00000389857 LILRB5O75023 590 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 FGF3P11487 239 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC2A5P22732 501 aa12.18□□□□□ -0.46
CCDC88C-204ENST00000389857 S100A7P31151 101 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms