RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SPPL2AQ8TCT8 520 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 ZNF675Q8TD23 568 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 LCORQ96JN0 433 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 JSRP1Q96MG2 331 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 SMC6Q96SB8 1091 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 DOHHQ9BU89 302 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 MECRQ9BV79 373 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 ROPN1BQ9BZX4 212 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 IQCGQ9H095 443 aaKnown RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 ZNF703Q9H7S9 590 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 ROPN1Q9HAT0 212 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 RRAGDQ9NQL2 400 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 PNPLA3Q9NST1 481 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 EHD3Q9NZN3 535 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 MID2Q9UJV3 735 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 BOKQ9UMX3 212 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 EXO1Q9UQ84 846 aaKnown RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 POLR3HQ9Y535 204 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 HCFC1P51610 2035 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 CREBBPQ92793 2442 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 AZIN1O14977 448 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 RSL1D1O76021 490 aaKnown RBP16.86■□□□□ 0.29
CLN3-202ENST00000355477 DDCP20711 480 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 CASP3P42574 277 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 ZNF763Q0D2J5 394 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 KIAA0040Q15053 153 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 NOXRED1Q6NXP6 359 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 OR2T11Q8NH01 316 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 RILPQ96NA2 401 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 PARD6BQ9BYG5 372 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 TUBB1Q9H4B7 451 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 CFL2Q9Y281 166 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 FIS1Q9Y3D6 152 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 INTS1Q8N201 2190 aaKnown RBP16.86■□□□□ 0.29
CLN3-202ENST00000355477 FBN2P35556 2912 aa16.86■□□□□ 0.29
CLN3-202ENST00000355477 AQP7O14520 342 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 SUSD5O60279 629 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 SEC22BO75396 215 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 PPM1BO75688 479 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 CLDN14O95500 239 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 CHRNGP07510 517 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 ENDOUP21128 410 aaKnown RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 DRD5P21918 477 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 PPICP45877 212 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 GSTM5P46439 218 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 MAN2A2P49641 1150 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 TMED10P49755 219 aaKnown RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 FNDC7Q5VTL7 733 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 Q6ZSR9 355 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 TICAM1Q8IUC6 712 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 SAMD14Q8IZD0 417 aaPredicted RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 FAM76AQ8TAV0 307 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 TCP10LQ8TDR4 215 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 MARVELD3Q96A59 401 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 NTNG2Q96CW9 530 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 HSPBAP1Q96EW2 488 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 EGLN2Q96KS0 407 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 SECISBP2Q96T21 854 aaKnown RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 ANGPTL4Q9BY76 406 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 TP63Q9H3D4 680 aaPredicted RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 LDAHQ9H6V9 325 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 MYNNQ9NPC7 610 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 GIMAP4Q9NUV9 329 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 SPRR3Q9UBC9 169 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 PRODH2Q9UF12 536 aa16.85■□□□□ 0.29
CLN3-202ENST00000355477 GPR55Q9Y2T6 319 aaPredicted RBP16.85■□□□□ 0.29
CLN3-202ENST00000355477 PCNX3Q9H6A9 2034 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TRGV5A0A0B4J1U4 118 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 OR14I1A6ND48 311 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 MYO1GB0I1T2 1018 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 C19orf84I3L1E1 186 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 ACOX3O15254 700 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 HNRNPRO43390 633 aaKnown RBP16.84■□□□□ 0.29
CLN3-202ENST00000355477 PRF1P14222 555 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 NAGAP17050 411 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 PRPH2P23942 346 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TACR1P25103 407 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 MPIP34949 423 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TBCELQ5QJ74 424 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 KANK2Q63ZY3 851 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TMEM198Q66K66 360 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 EID3Q8N140 333 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 OR7G2Q8NG99 324 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 HGDQ93099 445 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 SDCCAG3Q96C92 435 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 OMA1Q96E52 524 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 BBS4Q96RK4 519 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 NODALQ96S42 347 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TRMOQ9BU70 441 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 TMEM109Q9BVC6 243 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 SLC6A15Q9H2J7 730 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 ACKR4Q9NPB9 350 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 DNAJC15Q9Y5T4 150 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 CSMD1Q96PZ7 3565 aa16.84■□□□□ 0.29
CLN3-202ENST00000355477 MYO9AB2RTY4 2548 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 TMEM233B4DJY2 109 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 NPIPB8E9PQR5 432 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 SLC28A1O00337 649 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 BCKDKO14874 412 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 TO15178 435 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms